##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935268.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 649536 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91253448615627 34.0 31.0 34.0 31.0 34.0 2 33.045524805399545 34.0 33.0 34.0 31.0 34.0 3 33.09576528475712 34.0 33.0 34.0 31.0 34.0 4 36.368830980884816 37.0 37.0 37.0 35.0 37.0 5 23.450664782244555 37.0 0.0 37.0 0.0 37.0 6 29.409811003547148 37.0 17.0 37.0 17.0 37.0 7 34.43859616711006 37.0 32.0 37.0 32.0 37.0 8 35.703440609912306 37.0 35.0 37.0 35.0 37.0 9 38.12695832101685 39.0 39.0 39.0 37.0 39.0 10 38.074411579958614 39.0 38.0 39.0 37.0 39.0 11 38.01433638782146 39.0 38.0 39.0 35.0 39.0 12 37.565486747462806 39.0 37.0 39.0 35.0 39.0 13 37.345826867179035 39.0 37.0 39.0 35.0 39.0 14 38.028363323972805 40.0 38.0 41.0 33.0 41.0 15 38.31255388461918 40.0 38.0 41.0 33.0 41.0 16 38.61818128633363 40.0 38.0 41.0 35.0 41.0 17 38.72319163218051 40.0 38.0 41.0 35.0 41.0 18 38.73772816287319 40.0 37.0 41.0 35.0 41.0 19 38.751307086905115 40.0 37.0 41.0 35.0 41.0 20 38.636692962360826 40.0 37.0 41.0 35.0 41.0 21 38.59942635973987 40.0 37.0 41.0 35.0 41.0 22 38.65433478667849 40.0 37.0 41.0 35.0 41.0 23 38.64185202975663 40.0 37.0 41.0 35.0 41.0 24 38.60295657207607 40.0 36.0 41.0 35.0 41.0 25 38.53858908513154 40.0 36.0 41.0 35.0 41.0 26 38.51179611291753 40.0 36.0 41.0 35.0 41.0 27 38.48180547344566 40.0 36.0 41.0 35.0 41.0 28 38.45217817026308 40.0 36.0 41.0 35.0 41.0 29 38.3980302862351 40.0 36.0 41.0 35.0 41.0 30 38.32647305153217 40.0 36.0 41.0 35.0 41.0 31 37.666557357867774 40.0 35.0 41.0 34.0 41.0 32 37.93553244161986 40.0 35.0 41.0 34.0 41.0 33 38.010402810621734 40.0 35.0 41.0 34.0 41.0 34 37.93599277022367 40.0 35.0 41.0 34.0 41.0 35 37.89078819341807 40.0 35.0 41.0 34.0 41.0 36 37.890755862646564 40.0 35.0 41.0 34.0 41.0 37 37.87603150556705 40.0 35.0 41.0 34.0 41.0 38 37.870478310671004 40.0 35.0 41.0 34.0 41.0 39 37.86764859838408 40.0 35.0 41.0 34.0 41.0 40 37.74594941619864 40.0 35.0 41.0 34.0 41.0 41 37.61470033993497 40.0 35.0 41.0 34.0 41.0 42 37.6473867499261 40.0 35.0 41.0 34.0 41.0 43 37.632513055473446 40.0 35.0 41.0 34.0 41.0 44 37.62785126613459 39.0 35.0 41.0 34.0 41.0 45 37.598730478372254 39.0 35.0 41.0 34.0 41.0 46 37.542564230466056 39.0 35.0 41.0 34.0 41.0 47 37.470603630899596 39.0 35.0 41.0 34.0 41.0 48 37.43034104345256 39.0 35.0 41.0 34.0 41.0 49 37.401158673268306 39.0 35.0 41.0 34.0 41.0 50 37.32952753965908 39.0 35.0 41.0 34.0 41.0 51 36.67409966499162 38.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 5.0 13 7.0 14 6.0 15 5.0 16 7.0 17 24.0 18 47.0 19 78.0 20 124.0 21 214.0 22 375.0 23 604.0 24 961.0 25 1428.0 26 2006.0 27 2365.0 28 2899.0 29 3666.0 30 5265.0 31 8529.0 32 15377.0 33 32920.0 34 51075.0 35 51889.0 36 50953.0 37 95773.0 38 133704.0 39 188883.0 40 342.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.630000492659374 4.860546605576904 57.43022711597202 15.079225785791703 2 19.83184919696522 4.644854172824909 53.56562222879101 21.95767440141886 3 21.381878756527737 4.365885801556804 51.48382845600552 22.76840698590994 4 19.743170509409794 4.947377820474923 50.01293230860183 25.296519361513447 5 11.646621588333826 39.38149694551187 32.46178810720268 16.51009335895162 6 22.191533648635335 6.311736377968273 53.177960882845596 18.318769090550795 7 85.17357005616317 2.2499137846093213 8.161826288304267 4.414689870923243 8 87.41978889545769 2.614481722337176 5.900365799586166 4.065363582618977 9 82.80557197753473 4.761860774460538 7.674863287023352 4.757703960981377 10 45.687844861562716 24.365393142181496 15.562647797812593 14.384114198443196 11 37.62593605281309 21.475637993891024 22.470809932013005 18.427616021282887 12 33.78149940880875 19.90682579564489 26.577741649423587 19.73393314612277 13 30.82384964035866 20.561600896640066 29.15758325943443 19.456966203566854 14 21.67531899694551 23.02997832298749 35.12445807468716 20.170244605379843 15 19.49745664597497 21.63929328012612 38.29656862745098 20.566681446447927 16 27.80954404374815 21.181274017144545 30.229579268893485 20.779602670213816 17 29.191453591486844 21.164800719282688 26.690437481525276 22.95330820770519 18 29.348796679475807 20.594855404473346 29.423927234210268 20.632420681840575 19 28.957286432160807 23.094793822051436 27.44128116070549 20.506638585082275 20 25.66832323381614 29.373737560350772 26.324176027194795 18.63376317863829 21 23.9643376194699 24.871908562419943 32.61682185436989 18.54693196374027 22 22.88372007094295 20.810855749334912 34.224277022366735 22.081147157355403 23 21.90024879298453 23.26306778993004 32.429919203862454 22.406764213222978 24 22.71498423489999 27.069785200512364 28.65383904818209 21.561391516405557 25 26.792664301901663 24.413889299438367 25.529300916346436 23.264145482313527 26 20.27493472263277 24.692241846487338 26.501225490196077 28.531597940683813 27 19.354893339245248 23.558971327224356 32.67671075968075 24.409424573849638 28 18.004082914572862 24.942728347620456 29.391288550596116 27.661900187210563 29 21.217761602128288 26.944311015863633 28.107910877919007 23.730016504089072 30 25.768086757315995 23.600231549906393 29.586812740171446 21.04486895260617 31 24.73196250862154 23.977885752290867 29.89303133313627 21.397120405951327 32 28.148401320327128 23.135746132623904 26.128189969455118 22.58766257759385 33 28.47909892600256 22.154276283377673 26.488755049758595 22.87786974086117 34 21.717656912011034 23.68521529214701 31.48278155483299 23.114346241008967 35 20.457372647551484 27.15184377771209 29.631921864223077 22.75886171051335 36 25.676174992610107 25.896794019115184 27.55505468519066 20.871976303084047 37 21.772157355404474 29.205155680362598 26.736778254015174 22.285908710217754 38 24.46207754458567 25.681717410582323 25.461406296186816 24.394798748645186 39 23.169616464676324 22.39475564094985 25.947291605084246 28.488336289289585 40 26.4433380135974 20.942180264065424 28.042787466745494 24.571694255591684 41 22.06975440930141 21.429913045620257 28.068959996058723 28.431372549019606 42 20.8468814661543 22.35688245147305 32.72428318060893 24.071952901763723 43 19.79474578776234 21.87869494531481 32.4908858015568 25.835673465366042 44 22.834146221302593 21.813109665976942 29.45471844516701 25.898025667553455 45 21.338771061188293 21.667929106315892 27.03791629717214 29.955383535323676 46 21.237929845304958 22.167824416198638 29.754009015666565 26.840236722829836 47 18.075056655828163 24.95781604098926 33.302234210267024 23.66489309291556 48 19.868644694058528 27.137217952507637 29.897034190560646 23.09710316287319 49 24.210975219233422 22.505450044339344 29.732763080106416 23.550811656320818 50 21.23962336190758 23.241359986205538 27.14522366735639 28.373792984530493 51 20.128984382697805 24.742585476401615 26.118490738003747 29.00993940289684 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 170.0 1 407.5 2 645.0 3 1036.5 4 1428.0 5 1058.0 6 688.0 7 691.5 8 695.0 9 808.0 10 921.0 11 904.5 12 888.0 13 860.5 14 833.0 15 894.0 16 955.0 17 1042.0 18 1129.0 19 1302.5 20 1476.0 21 1526.0 22 1576.0 23 1807.0 24 2038.0 25 2574.5 26 4211.0 27 5311.0 28 6133.0 29 6955.0 30 8141.0 31 9327.0 32 10971.5 33 12616.0 34 14848.5 35 17081.0 36 17322.5 37 17564.0 38 19812.5 39 22061.0 40 24465.0 41 26869.0 42 29706.5 43 32544.0 44 36918.5 45 41293.0 46 47476.5 47 53660.0 48 59578.0 49 65496.0 50 64830.5 51 64165.0 52 58234.5 53 52304.0 54 49761.0 55 47218.0 56 44887.0 57 42556.0 58 38407.5 59 34259.0 60 29056.0 61 23853.0 62 21068.5 63 18284.0 64 15666.0 65 13048.0 66 10953.0 67 8858.0 68 7336.5 69 5815.0 70 5063.0 71 4311.0 72 3891.5 73 3472.0 74 2705.0 75 1502.5 76 1067.0 77 823.5 78 580.0 79 446.0 80 312.0 81 207.0 82 102.0 83 69.0 84 36.0 85 30.0 86 24.0 87 13.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 649536.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.849191898764815 #Duplication Level Percentage of deduplicated Percentage of total 1 67.44394331781706 23.503669230920234 2 11.168069684964182 7.783964071801893 3 4.462853746524572 4.665805398862689 4 2.8311601566874995 3.9465457438615896 5 2.0785404744119544 3.6217727931065933 6 1.696518666567062 3.547338274261928 7 1.4158826355038494 3.4539655969561767 8 1.223442644194314 3.4108789987727914 9 1.0653887944378864 3.3415144689743643 >10 6.453854917729567 36.136012273807246 >50 0.10899854105582954 2.5435897494972357 >100 0.04774316255497412 3.103634684979915 >500 0.0036032575513188013 0.9413087141973676 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 958 0.1474899004828062 No Hit CCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC 951 0.14641220809932012 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 878 0.13517341610010838 No Hit CTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGCT 714 0.1099246231155779 Illumina Single End Adapter 2 (95% over 21bp) TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 651 0.10022539166420338 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11208000788255 0.0 2 0.0 0.0 0.0 0.44093014090058136 0.0 3 0.0 0.0 0.0 0.6784843334318652 0.0 4 0.0 0.0 0.0 0.9673058922061287 0.0 5 0.0 0.0 0.0 1.4996859296482412 0.0 6 0.0 0.0 0.0 2.102885752290866 0.0 7 0.0 0.0 0.0 2.6287996354320624 0.0 8 0.0 0.0 0.0 3.5025002463296877 0.0 9 0.0 0.0 0.0 3.9731439058035276 0.0 10 0.0 0.0 0.0 4.829293526455809 0.0 11 0.0 0.0 0.0 6.63088727953493 0.0 12 0.0 0.0 0.0 8.149817716031135 0.0 13 0.0 0.0 0.0 8.604603901862253 0.0 14 0.0 0.0 0.0 8.793046112917528 0.0 15 0.0 0.0 0.0 9.026135579860085 0.0 16 0.0 0.0 0.0 9.549894078234308 0.0 17 0.0 0.0 0.0 10.3047406148389 0.0 18 0.0 0.0 0.0 11.183059907380038 0.0 19 0.0 0.0 0.0 11.800115774953197 0.0 20 0.0 0.0 0.0 12.514317913094887 0.0 21 0.0 0.0 0.0 13.47069292541137 0.0 22 0.0 0.0 0.0 14.453086510986305 0.0 23 0.0 0.0 0.0 15.363120750812888 0.0 24 0.0 0.0 0.0 16.047917282490886 0.0 25 0.0 0.0 0.0 16.65681347916051 0.0 26 0.0 0.0 0.0 17.242770223667357 0.0 27 0.0 0.0 0.0 18.001311705586758 0.0 28 0.0 0.0 0.0 18.638997684500936 0.0 29 0.0 0.0 0.0 19.391380924228987 0.0 30 0.0 0.0 0.0 20.214276037047984 0.0 31 0.0 0.0 0.0 20.839183663415113 0.0 32 0.0 0.0 0.0 21.470711400137944 0.0 33 0.0 0.0 0.0 22.149657601734162 0.0 34 0.0 0.0 0.0 22.88125677406641 0.0 35 0.0 0.0 0.0 23.70338210661149 0.0 36 0.0 0.0 0.0 24.359234899990145 0.0 37 0.0 0.0 0.0 25.0586572568726 0.0 38 0.0 0.0 0.0 26.040742930337963 0.0 39 0.0 0.0 0.0 28.184734949256086 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 190 0.0 45.000004 4 TTACGGG 1025 0.0 45.000004 3 TTGATCG 25 3.8889262E-5 45.0 2 AGATACG 20 7.031019E-4 45.0 7 CTATCGG 35 1.2108285E-7 45.0 3 TAACGAA 35 1.2108285E-7 45.0 19 ATCGTTC 20 7.031019E-4 45.0 22 CCGTATG 40 6.8066583E-9 45.0 1 TACGAAT 85 0.0 45.0 12 TAGGCGT 70 0.0 45.0 4 CCGATAA 30 2.164039E-6 44.999996 15 ATTCCGA 30 2.164039E-6 44.999996 12 TATTACG 30 2.164039E-6 44.999996 1 CGTAAGG 30 2.164039E-6 44.999996 2 CGATAAC 30 2.164039E-6 44.999996 16 ACGAACG 30 2.164039E-6 44.999996 21 TACGGGG 905 0.0 44.502758 4 TTCACGG 280 0.0 44.196426 2 TTTACGG 630 0.0 43.57143 2 CTACGGG 465 0.0 43.54839 3 >>END_MODULE