SRR2935267.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935267.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	860337
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	8549	0.9936803833846505	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	8037	0.9341688198926699	No Hit
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	8023	0.932541550578436	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	5852	0.6801985733497455	No Hit
TCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	2521	0.2930247100845366	No Hit
GCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	2007	0.2332806795476656	No Hit
TTCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	1802	0.2094528074463844	No Hit
TGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	1680	0.19527231770806092	No Hit
TGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCTT	1571	0.182602863761526	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC	1447	0.168189906978312	No Hit
TTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	1389	0.16144836267648607	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	1129	0.13122764684071475	No Hit
TTTCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	1109	0.12890297639180925	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	1071	0.12448610253888884	No Hit
TCTGACTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1050	0.12204519856753807	No Hit
TGCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	958	0.11135171450257282	No Hit
TTGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	878	0.10205303270695087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	85	0.0	45.000004	1
CGGAAAG	20	7.032295E-4	45.000004	21
TCGCACG	20	7.032295E-4	45.000004	1
TGCCCCG	20	7.032295E-4	45.000004	42
ACTGCGA	20	7.032295E-4	45.000004	37
CGTATAA	20	7.032295E-4	45.000004	26
CACGGGT	160	0.0	45.000004	4
CAACGGG	20	7.032295E-4	45.000004	3
CATGCGG	20	7.032295E-4	45.000004	2
CTATCGT	20	7.032295E-4	45.000004	17
CTATCGA	20	7.032295E-4	45.000004	41
CGGTTGC	20	7.032295E-4	45.000004	6
TAGCGGA	20	7.032295E-4	45.000004	9
CACTGCG	20	7.032295E-4	45.000004	36
ACGGGTA	80	0.0	45.000004	5
TCGGCGT	75	0.0	45.000004	4
AACGGCG	20	7.032295E-4	45.000004	9
AATGCGC	20	7.032295E-4	45.000004	11
GTGCTAT	20	7.032295E-4	45.000004	26
GCTTACG	40	6.8121153E-9	45.000004	1