##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935267.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 860337 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10866207079319 33.0 31.0 34.0 30.0 34.0 2 32.26452076337528 34.0 31.0 34.0 30.0 34.0 3 32.326837041763866 34.0 31.0 34.0 30.0 34.0 4 35.83895729231685 37.0 35.0 37.0 35.0 37.0 5 31.55680971526274 37.0 35.0 37.0 0.0 37.0 6 33.33931703506882 37.0 35.0 37.0 17.0 37.0 7 35.11838035560484 37.0 35.0 37.0 32.0 37.0 8 35.68349728071674 37.0 35.0 37.0 35.0 37.0 9 37.68553020502431 39.0 37.0 39.0 35.0 39.0 10 37.39169767195878 39.0 37.0 39.0 35.0 39.0 11 37.30507115235076 39.0 37.0 39.0 34.0 39.0 12 37.095814779557315 39.0 37.0 39.0 34.0 39.0 13 36.97340112072362 39.0 37.0 39.0 33.0 39.0 14 37.996297962310116 40.0 37.0 41.0 33.0 41.0 15 38.12448377786844 40.0 37.0 41.0 33.0 41.0 16 38.2315615857507 40.0 37.0 41.0 34.0 41.0 17 38.25052508493765 40.0 37.0 41.0 34.0 41.0 18 38.261281335104734 40.0 37.0 41.0 34.0 41.0 19 38.309278805863286 40.0 37.0 41.0 34.0 41.0 20 38.202304445816 40.0 37.0 41.0 34.0 41.0 21 38.145387214544996 40.0 37.0 41.0 34.0 41.0 22 38.10705921051867 40.0 37.0 41.0 34.0 41.0 23 38.07681059863751 40.0 37.0 41.0 34.0 41.0 24 38.057721567246325 40.0 37.0 41.0 34.0 41.0 25 37.95351007802756 40.0 36.0 41.0 34.0 41.0 26 37.87781299653508 40.0 36.0 41.0 34.0 41.0 27 37.804958987001605 40.0 36.0 41.0 33.0 41.0 28 37.696730467247136 39.0 36.0 41.0 33.0 41.0 29 37.65446795848604 39.0 36.0 41.0 33.0 41.0 30 37.63496978509584 39.0 36.0 41.0 33.0 41.0 31 37.36215575989409 39.0 35.0 41.0 32.0 41.0 32 37.39381428440251 39.0 35.0 41.0 33.0 41.0 33 37.42211714711793 39.0 35.0 41.0 33.0 41.0 34 37.33292884067522 39.0 35.0 41.0 33.0 41.0 35 37.282271946923125 39.0 35.0 41.0 32.0 41.0 36 37.28187094127069 39.0 35.0 41.0 32.0 41.0 37 37.115475679878934 39.0 35.0 41.0 32.0 41.0 38 37.08518406159447 39.0 35.0 40.0 32.0 41.0 39 37.169678858400836 39.0 35.0 41.0 32.0 41.0 40 37.15651541198391 39.0 35.0 41.0 32.0 41.0 41 37.14763633320431 39.0 35.0 41.0 32.0 41.0 42 37.08754243976488 39.0 35.0 41.0 32.0 41.0 43 36.947979687029616 39.0 35.0 40.0 32.0 41.0 44 36.81896745112671 39.0 35.0 40.0 31.0 41.0 45 36.8870070681605 39.0 35.0 40.0 31.0 41.0 46 36.80119650788005 39.0 35.0 40.0 31.0 41.0 47 36.73781901743154 39.0 35.0 40.0 31.0 41.0 48 36.6928738389724 39.0 35.0 40.0 31.0 41.0 49 36.67534582378766 39.0 35.0 40.0 31.0 41.0 50 36.53090475011536 38.0 35.0 40.0 31.0 41.0 51 35.79558126641072 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 16.0 11 13.0 12 14.0 13 17.0 14 16.0 15 24.0 16 35.0 17 56.0 18 113.0 19 180.0 20 291.0 21 540.0 22 823.0 23 1331.0 24 2029.0 25 2942.0 26 4052.0 27 5300.0 28 7031.0 29 9476.0 30 12275.0 31 16542.0 32 22681.0 33 34146.0 34 55063.0 35 78926.0 36 79426.0 37 122561.0 38 194420.0 39 209865.0 40 130.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.158715712563797 4.67305253638981 55.74455126305157 16.423680487994822 2 19.0153393379571 4.425707600626266 53.433945070361965 23.12500799105467 3 20.24171923327719 4.0205175413820395 52.34227982755595 23.395483397784822 4 19.04567628731532 4.502537958962593 51.80388615158944 24.647899602132654 5 15.22508040453915 17.308217593803356 44.907402564343975 22.55929943731352 6 19.85396420239976 6.055417818831458 54.03696458480805 20.053653393960737 7 78.19924053016433 2.2270342900514564 12.641674134670483 6.932051045113717 8 77.60342749410987 2.5526043864206702 10.678606174092245 9.165361945377217 9 71.90077841589981 5.539922146786666 14.315204390837543 8.244095046475975 10 34.42197650455577 26.842388505899432 21.832142520895882 16.903492468648913 11 25.725384355200347 26.44521855970393 27.559200638819437 20.270196446276284 12 24.04929696153949 20.78441354957418 34.32155074116305 20.844738747723277 13 21.87177815204972 26.2590124567466 33.604622374720606 18.264587016483073 14 16.789583616652546 29.631063176406453 32.02663607400356 21.552717132937442 15 13.793664575625597 26.31864025376103 39.10397902217387 20.783716148439506 16 15.202414867662323 25.51848868524776 33.93693401539164 25.342162431698277 17 14.932520628544395 24.578740656277713 30.194563293221144 30.294175421956744 18 16.585245084193755 24.226785550313423 35.16075677321794 24.02721259227489 19 19.717970981138784 24.47354931846474 32.372779503845585 23.435700196550886 20 21.060933099471484 27.803174802432068 31.14326130341947 19.99263079467697 21 20.658765111810837 27.039055625876834 31.456859346976824 20.8453199153355 22 17.153394541906252 26.58411761902603 28.691315147436413 27.5711726916313 23 17.512672359784595 26.539716413451934 28.32459838412157 27.6230128426419 24 20.6768975413123 24.35998916703571 29.294102194837606 25.669011096814387 25 18.04281345565749 26.743125077731168 27.874542185213468 27.339519281397873 26 19.790035765054856 27.91952455839979 27.728320413977315 24.562119262568043 27 22.685761509733975 28.02831913540857 27.730180150336437 21.555739204521018 28 17.340762980088034 28.24614075647101 30.305217606589046 24.10787865685191 29 19.784456555977485 26.783806810587013 28.367256086858987 25.06448054657652 30 22.41586727061605 26.69605050114083 26.535996940733693 24.35208528750943 31 21.100917431192663 32.298971217092834 24.61384318005619 21.986268171658317 32 21.88572617474315 32.52318568188977 22.81106124692998 22.780026896437093 33 23.776148183793094 27.846762373349048 23.851816206904967 24.525273235952888 34 19.94985685841711 26.430805602920714 27.8209585313662 25.798379007295978 35 21.636521502620486 26.3573460167353 25.64483452414577 26.36129795649844 36 27.58151747512893 25.78849915788813 25.253941188162315 21.376042178820626 37 21.48902116263743 30.199561334686294 28.98143401945982 19.329983483216463 38 18.190778729730326 34.397102530752484 24.513882350753253 22.898236388763937 39 20.474651212257523 26.363738860469795 28.844045995929502 24.317563931343184 40 22.057054386827488 23.577970028023902 30.27360208848393 24.091373496664676 41 21.081041498854518 25.538597084630787 27.147269035273386 26.233092381241303 42 26.395238145052463 24.713920242881567 24.848053727783416 24.042787884282554 43 26.896088393269153 23.75534238327539 25.880323640619896 23.468245582835564 44 20.76883825756651 25.407485671312518 26.44347505686725 27.380201014253718 45 21.766121880146965 23.919580350490563 25.399116857696463 28.91518091166601 46 23.344224414386456 23.50055850207535 29.504833571030886 23.650383512507307 47 18.94873752959596 25.501053656880966 32.335933477230434 23.21427533629264 48 19.663108758544617 24.423801370858165 30.443303031254032 25.46978683934319 49 23.05189710543659 20.66725015894934 32.34883539822186 23.93201733739221 50 21.65314289633016 21.190998411087747 29.590265210028164 27.56559348255393 51 19.349626948509712 20.50568556275041 26.64874345750561 33.49594403123427 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 338.0 1 523.5 2 709.0 3 1100.0 4 1491.0 5 1158.5 6 826.0 7 968.5 8 1111.0 9 1627.0 10 2143.0 11 2197.5 12 2252.0 13 2437.0 14 2622.0 15 2483.5 16 2345.0 17 2287.5 18 2230.0 19 2403.0 20 2576.0 21 2647.5 22 2719.0 23 3141.0 24 3563.0 25 3769.0 26 5153.0 27 6331.0 28 6993.5 29 7656.0 30 9066.0 31 10476.0 32 12375.5 33 14275.0 34 16139.0 35 18003.0 36 19735.0 37 21467.0 38 23988.0 39 26509.0 40 32036.5 41 37564.0 42 46020.0 43 54476.0 44 65582.0 45 76688.0 46 92927.0 47 109166.0 48 126234.0 49 143302.0 50 131545.0 51 119788.0 52 92322.0 53 64856.0 54 51735.5 55 38615.0 56 31800.0 57 24985.0 58 21242.5 59 17500.0 60 15105.0 61 12710.0 62 11104.0 63 9498.0 64 8205.5 65 6913.0 66 5310.5 67 3708.0 68 3270.5 69 2833.0 70 2169.5 71 1506.0 72 1293.5 73 1081.0 74 907.0 75 556.5 76 380.0 77 314.0 78 248.0 79 180.5 80 113.0 81 80.0 82 47.0 83 26.5 84 6.0 85 4.0 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 860337.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.776003663733245 #Duplication Level Percentage of deduplicated Percentage of total 1 63.36035541049186 16.965371086067705 2 13.38325547708388 7.1670019537415195 3 6.482385814130712 5.20717158926689 4 3.8006836406876214 4.07068476350971 5 2.518931277587469 3.3723456558687164 6 1.684697115105118 2.7065673675801283 7 1.268973119140782 2.378462022110481 8 0.9368703059251936 2.006851419511669 9 0.7331794231854657 1.7668453429249067 >10 5.058189250426989 28.89811557365136 >50 0.619387043589143 10.863807063599683 >100 0.13510708818018782 6.900155374764343 >500 0.011405143807418453 2.1483776526429366 >1k 0.004825253149292423 1.9704326445103004 >5k 0.001754637508833608 3.5778104902496577 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 8549 0.9936803833846505 No Hit CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 8037 0.9341688198926699 No Hit CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT 8023 0.932541550578436 No Hit GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 5852 0.6801985733497455 No Hit TCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 2521 0.2930247100845366 No Hit GCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 2007 0.2332806795476656 No Hit TTCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 1802 0.2094528074463844 No Hit TGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 1680 0.19527231770806092 No Hit TGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCTT 1571 0.182602863761526 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC 1447 0.168189906978312 No Hit TTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 1389 0.16144836267648607 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 1129 0.13122764684071475 No Hit TTTCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 1109 0.12890297639180925 No Hit CGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 1071 0.12448610253888884 No Hit TCTGACTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 1050 0.12204519856753807 No Hit TGCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 958 0.11135171450257282 No Hit TTGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 878 0.10205303270695087 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9656681044753394 0.0 2 0.0 0.0 0.0 3.7578297806557197 0.0 3 0.0 0.0 0.0 5.211911146446102 0.0 4 0.0 0.0 0.0 6.8667278054994725 0.0 5 0.0 0.0 0.0 9.569738369964329 0.0 6 0.0 0.0 0.0 11.296503579411324 0.0 7 0.0 0.0 0.0 12.891111273838042 0.0 8 0.0 0.0 0.0 15.403731328537539 0.0 9 0.0 0.0 0.0 16.575249001263458 0.0 10 0.0 0.0 0.0 18.7301022738764 0.0 11 0.0 0.0 0.0 22.647404447327038 0.0 12 0.0 0.0 0.0 25.942741042173008 0.0 13 0.0 0.0 0.0 27.036614721905487 0.0 14 0.0 0.0 0.0 27.392754234677806 0.0 15 0.0 0.0 0.0 27.932426479391214 0.0 16 0.0 0.0 0.0 29.330250820318085 0.0 17 0.0 0.0 0.0 31.42280292490036 0.0 18 1.1623352244527435E-4 0.0 0.0 33.988076765267564 0.0 19 1.1623352244527435E-4 0.0 0.0 35.38822577664334 0.0 20 1.1623352244527435E-4 0.0 0.0 36.79197802721492 0.0 21 1.1623352244527435E-4 0.0 0.0 38.53501592980425 0.0 22 1.1623352244527435E-4 0.0 0.0 40.23283899216237 0.0 23 1.1623352244527435E-4 0.0 0.0 41.83988367349074 0.0 24 2.324670448905487E-4 0.0 0.0 42.9858299712787 0.0 25 3.4870056733582303E-4 0.0 0.0 44.00810380118489 0.0 26 3.4870056733582303E-4 0.0 0.0 44.88729416496094 0.0 27 3.4870056733582303E-4 0.0 0.0 45.72092098793845 0.0 28 3.4870056733582303E-4 0.0 0.0 46.608015231240785 0.0 29 3.4870056733582303E-4 0.0 0.0 47.535907440921406 0.0 30 3.4870056733582303E-4 0.0 0.0 48.60688311673216 0.0 31 3.4870056733582303E-4 0.0 0.0 49.566390844517905 0.0 32 4.649340897810974E-4 0.0 0.0 50.35596516248865 0.0 33 4.649340897810974E-4 0.0 0.0 51.16785631676889 0.0 34 4.649340897810974E-4 0.0 0.0 51.95847673644165 0.0 35 4.649340897810974E-4 0.0 0.0 52.865795612649464 0.0 36 4.649340897810974E-4 0.0 0.0 53.59957783984648 0.0 37 4.649340897810974E-4 0.0 0.0 54.345215886332916 0.0 38 4.649340897810974E-4 0.0 0.0 55.076092275468795 0.0 39 4.649340897810974E-4 0.0 0.0 55.8421874219056 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCTACG 85 0.0 45.000004 1 CGGAAAG 20 7.032295E-4 45.000004 21 TCGCACG 20 7.032295E-4 45.000004 1 TGCCCCG 20 7.032295E-4 45.000004 42 ACTGCGA 20 7.032295E-4 45.000004 37 CGTATAA 20 7.032295E-4 45.000004 26 CACGGGT 160 0.0 45.000004 4 CAACGGG 20 7.032295E-4 45.000004 3 CATGCGG 20 7.032295E-4 45.000004 2 CTATCGT 20 7.032295E-4 45.000004 17 CTATCGA 20 7.032295E-4 45.000004 41 CGGTTGC 20 7.032295E-4 45.000004 6 TAGCGGA 20 7.032295E-4 45.000004 9 CACTGCG 20 7.032295E-4 45.000004 36 ACGGGTA 80 0.0 45.000004 5 TCGGCGT 75 0.0 45.000004 4 AACGGCG 20 7.032295E-4 45.000004 9 AATGCGC 20 7.032295E-4 45.000004 11 GTGCTAT 20 7.032295E-4 45.000004 26 GCTTACG 40 6.8121153E-9 45.000004 1 >>END_MODULE