SRR2935263.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935263.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2053005
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	9824	0.47851807472461094	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	8536	0.4157807701393811	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	8294	0.403993170985945	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	7220	0.35167961110664614	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	3408	0.16600056989632272	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	2438	0.11875275510775667	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	2239	0.109059646712989	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	2236	0.10891351945075632	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2101	0.1023377926502858	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	2080	0.10131490181465705	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAATT	35	1.2125565E-7	45.0	37
ACGCATT	20	7.034585E-4	45.0	21
TAACGCG	20	7.034585E-4	45.0	43
CACTCGA	20	7.034585E-4	45.0	18
GTCGTAG	40	6.8193913E-9	45.0	1
CGTCGAC	20	7.034585E-4	45.0	29
TACGGGT	205	0.0	43.90244	4
TTACGGG	1085	0.0	43.75576	3
CTACGAA	150	0.0	43.500004	11
CTACGGG	555	0.0	42.972973	3
TACGGGA	535	0.0	42.897194	4
TTTACGG	730	0.0	42.53425	2
TCTACGG	430	0.0	41.860466	2
TACCGTA	65	0.0	41.53846	18
CCGTACA	55	6.184564E-11	40.909092	20
CAACCCG	150	0.0	40.500004	23
GCGGATA	50	1.0822987E-9	40.5	5
TACGGGG	1040	0.0	40.45673	4
TTATGGG	4070	0.0	40.356266	3
TGTTACG	190	0.0	40.263157	1