SRR2935258.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935258.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1177371
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	60961	5.177722230291047	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCC	6593	0.5599764220453876	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4287	0.3641163235717544	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	3757	0.3191007762209193	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	3136	0.2663561443249409	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	2907	0.2469060304695801	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	2686	0.22813539657423193	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	2145	0.18218556427837954	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGT	1961	0.16655752519808964	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTC	1756	0.14914585122276666	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	1718	0.14591832141270678	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	1509	0.1281669074573775	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	1473	0.12510924763732076	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCT	1459	0.12392015770729872	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1379	0.11712535810717267	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1336	0.11347315332210493	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	1192	0.10124251404187805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	35	1.2119563E-7	45.0	1
CGTTGTT	105	0.0	45.0	1
CGTTGCC	20	7.033357E-4	45.0	28
CGTTGAT	20	7.033357E-4	45.0	25
GCGTTAG	70	0.0	45.0	1
CCGTCGA	20	7.033357E-4	45.0	41
TCGCTCG	20	7.033357E-4	45.0	30
TTGAACG	50	2.1827873E-11	45.0	1
GTCCGAC	20	7.033357E-4	45.0	22
AACTGCG	25	3.8908638E-5	45.0	1
ACGCTAG	20	7.033357E-4	45.0	1
CCGACTA	25	3.8908638E-5	45.0	14
CCGACCA	20	7.033357E-4	45.0	15
CATAACG	20	7.033357E-4	45.0	1
GTATACG	45	3.8562575E-10	45.0	1
CGTCGAA	20	7.033357E-4	45.0	42
ACGTACG	20	7.033357E-4	45.0	1
GCGGACC	25	3.8908638E-5	45.0	5
GGACCGC	20	7.033357E-4	45.0	18
TAAATCG	20	7.033357E-4	45.0	39