SRR2935245.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935245.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1597899
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	110374	6.9074453391609865	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC	6668	0.4172979643894889	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	5403	0.3381315089376738	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4501	0.28168238418072733	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	3171	0.19844808714443155	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	2827	0.17691981783579563	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	2824	0.1767320713011273	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	2645	0.16552986139924988	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	2360	0.14769394060575794	No Hit
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	1976	0.12366238416821089	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGT	1951	0.12209782971264141	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1872	0.11715383763304188	No Hit
GAACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCT	1705	0.10670261386983783	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	1662	0.10401158020625834	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTC	1615	0.10107021782978774	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	1608	0.1006321425822283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTA	20	7.0341135E-4	45.000004	41
CATATCG	20	7.0341135E-4	45.000004	1
TATACGA	20	7.0341135E-4	45.000004	32
TCCGTAT	25	3.891492E-5	45.0	40
CGTTTTT	38780	0.0	44.257347	1
CGTTATT	2690	0.0	44.16357	1
CGGTCTA	60	3.6379788E-12	41.249996	31
CGGGTAC	50	1.0822987E-9	40.5	6
ACGGGTC	50	1.0822987E-9	40.5	5
ATGATCG	45	1.9290383E-8	40.0	10
TCGATAG	45	1.9290383E-8	40.0	1
TAATACG	85	0.0	39.705883	4
ATATCGG	40	3.459354E-7	39.375004	2
GGCGATA	360	0.0	39.375	8
GTTATTT	3085	0.0	39.23825	2
GTTTTTT	44940	0.0	38.786716	2
TCGGGTA	70	0.0	38.571426	5
ACTACGG	70	0.0	38.571426	2
GTATCCG	35	6.24982E-6	38.571426	1
ATACGAG	35	6.24982E-6	38.571426	1