FastQCFastQC Report
Sat 14 Jan 2017
SRR2935222.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935222.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2329697
Sequences flagged as poor quality0
Sequence length51
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2066908.87196918740935No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCC77490.3326183619586582No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTC65720.28209677052423554No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG63640.2731685708484837No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC62570.26857569889989985No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49360.21187304615149521No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG41770.1792937021423816No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGT39680.17032257842972712No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC35280.15143600219255982No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA35170.1509638377866306No Hit
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC32520.13958896800742757No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCT31250.13413761532079066No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTC30250.12984521163052534No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTT29280.125681580050968No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG27560.1182986457037117No Hit
CGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTG27410.1176547851501719No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA26570.11404916605034904No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAATCG207.034779E-445.0000042
TACTACG253.892045E-544.9999961
CGTTATT76050.044.644971
CGTTTTT1019750.044.5829851
GTTATTT80000.042.9468772
CCGATGA11650.040.5579418
CGTAAGG1400.040.178572
TACGGCT6900.039.7826087
ACGGCTG6900.039.7826088
CACGCGA403.4602635E-739.37500441
TACGCTT403.4602635E-739.37500415
GTTTTTT1165650.039.166772
CCGTCGA1000.038.24999641
CGTCGAA1000.038.24999642
CGATGAA12700.038.0905519
CGACCAC20950.037.69689612
TGCGTAG900.037.51
CGCGACC301.14028204E-437.49999610
CGCTATC301.14028204E-437.4999961
TCGCTTC301.14028204E-437.49999614