Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935222.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2329697 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 29 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 206690 | 8.87196918740935 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCC | 7749 | 0.3326183619586582 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTC | 6572 | 0.28209677052423554 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG | 6364 | 0.2731685708484837 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC | 6257 | 0.26857569889989985 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4936 | 0.21187304615149521 | No Hit |
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG | 4177 | 0.1792937021423816 | No Hit |
CGTTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGT | 3968 | 0.17032257842972712 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC | 3528 | 0.15143600219255982 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 3517 | 0.1509638377866306 | No Hit |
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC | 3252 | 0.13958896800742757 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCT | 3125 | 0.13413761532079066 | No Hit |
CGTTTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTC | 3025 | 0.12984521163052534 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTT | 2928 | 0.125681580050968 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG | 2756 | 0.1182986457037117 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTG | 2741 | 0.1176547851501719 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA | 2657 | 0.11404916605034904 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAATCG | 20 | 7.034779E-4 | 45.000004 | 2 |
TACTACG | 25 | 3.892045E-5 | 44.999996 | 1 |
CGTTATT | 7605 | 0.0 | 44.64497 | 1 |
CGTTTTT | 101975 | 0.0 | 44.582985 | 1 |
GTTATTT | 8000 | 0.0 | 42.946877 | 2 |
CCGATGA | 1165 | 0.0 | 40.55794 | 18 |
CGTAAGG | 140 | 0.0 | 40.17857 | 2 |
TACGGCT | 690 | 0.0 | 39.782608 | 7 |
ACGGCTG | 690 | 0.0 | 39.782608 | 8 |
CACGCGA | 40 | 3.4602635E-7 | 39.375004 | 41 |
TACGCTT | 40 | 3.4602635E-7 | 39.375004 | 15 |
GTTTTTT | 116565 | 0.0 | 39.16677 | 2 |
CCGTCGA | 100 | 0.0 | 38.249996 | 41 |
CGTCGAA | 100 | 0.0 | 38.249996 | 42 |
CGATGAA | 1270 | 0.0 | 38.09055 | 19 |
CGACCAC | 2095 | 0.0 | 37.696896 | 12 |
TGCGTAG | 90 | 0.0 | 37.5 | 1 |
CGCGACC | 30 | 1.14028204E-4 | 37.499996 | 10 |
CGCTATC | 30 | 1.14028204E-4 | 37.499996 | 1 |
TCGCTTC | 30 | 1.14028204E-4 | 37.499996 | 14 |