##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935209.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4009061 Sequences flagged as poor quality 0 Sequence length 51 %GC 32 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20469207128552 33.0 31.0 34.0 30.0 34.0 2 32.36626681409936 34.0 31.0 34.0 31.0 34.0 3 32.228318551401436 34.0 31.0 34.0 30.0 34.0 4 35.911390722166615 37.0 35.0 37.0 35.0 37.0 5 33.44810692578636 37.0 35.0 37.0 30.0 37.0 6 34.4891232635273 37.0 35.0 37.0 29.0 37.0 7 35.71619588726637 37.0 35.0 37.0 32.0 37.0 8 35.740637770290846 37.0 35.0 37.0 35.0 37.0 9 37.86559994971391 39.0 38.0 39.0 35.0 39.0 10 37.407109295667986 39.0 37.0 39.0 34.0 39.0 11 37.281839562930074 39.0 37.0 39.0 34.0 39.0 12 37.53845950460719 39.0 37.0 39.0 35.0 39.0 13 37.57557193567272 39.0 37.0 39.0 35.0 39.0 14 38.83999096047678 40.0 38.0 41.0 35.0 41.0 15 38.935520562046825 40.0 38.0 41.0 35.0 41.0 16 38.87130228250456 40.0 38.0 41.0 35.0 41.0 17 38.7684881821454 40.0 38.0 41.0 35.0 41.0 18 38.239419405192386 39.0 38.0 40.0 35.0 41.0 19 37.603976093154984 38.0 37.0 40.0 34.0 41.0 20 36.95734512395796 38.0 35.0 40.0 34.0 41.0 21 36.8081411083543 37.0 35.0 40.0 33.0 41.0 22 36.75822967023949 37.0 35.0 40.0 33.0 41.0 23 36.60466553140498 36.0 35.0 40.0 33.0 41.0 24 36.301247349441674 36.0 35.0 40.0 33.0 41.0 25 36.08990833514382 36.0 35.0 40.0 32.0 41.0 26 36.31235718289145 36.0 35.0 40.0 33.0 41.0 27 36.2338545110688 36.0 35.0 40.0 33.0 41.0 28 36.17628492058365 36.0 35.0 40.0 33.0 41.0 29 36.09726791385813 36.0 35.0 40.0 33.0 41.0 30 35.69943710010898 36.0 35.0 40.0 31.0 41.0 31 35.30584418645663 36.0 35.0 40.0 30.0 41.0 32 34.546194981817436 36.0 35.0 40.0 22.0 41.0 33 33.566248555459744 36.0 33.0 40.0 16.0 41.0 34 32.65937011185412 36.0 33.0 40.0 10.0 41.0 35 31.998181120217428 35.0 31.0 40.0 8.0 41.0 36 31.586004553185894 35.0 30.0 40.0 7.0 41.0 37 31.400203938029378 35.0 29.0 40.0 7.0 41.0 38 31.223367267297753 35.0 27.0 40.0 7.0 41.0 39 31.00800337036528 35.0 25.0 40.0 7.0 41.0 40 30.84697214634549 35.0 24.0 40.0 7.0 41.0 41 30.638562995175178 35.0 23.0 40.0 7.0 41.0 42 30.55221559362654 35.0 23.0 40.0 7.0 41.0 43 30.3942107640667 35.0 22.0 40.0 7.0 41.0 44 30.256707992220623 35.0 22.0 40.0 7.0 41.0 45 30.231633791553683 35.0 23.0 40.0 7.0 41.0 46 30.149145398386306 35.0 22.0 40.0 7.0 41.0 47 30.09887377617851 35.0 22.0 40.0 7.0 41.0 48 30.01462985971029 35.0 22.0 40.0 7.0 41.0 49 29.941621242480473 35.0 22.0 40.0 7.0 41.0 50 29.844295210274925 35.0 20.0 40.0 7.0 41.0 51 29.189140798805507 35.0 20.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 28.0 9 65.0 10 88.0 11 94.0 12 125.0 13 169.0 14 249.0 15 523.0 16 854.0 17 1698.0 18 3066.0 19 5796.0 20 9688.0 21 14963.0 22 23265.0 23 37593.0 24 64897.0 25 120370.0 26 186037.0 27 208920.0 28 186809.0 29 152028.0 30 125385.0 31 116461.0 32 118702.0 33 136292.0 34 191809.0 35 282082.0 36 348853.0 37 354242.0 38 577102.0 39 740556.0 40 248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.686398635490953 13.320051752767045 14.39928202638972 45.594267585352284 2 56.577612563141344 15.964710938546459 17.29222877875892 10.165447719553281 3 19.865674281334208 16.30578831302392 54.038813577543465 9.7897238280984 4 17.53410586668549 17.64191165961306 53.69090168495815 11.1330807887433 5 15.510365145354484 25.385894602252247 48.88803138690082 10.215708865492443 6 17.17010541870029 22.312307046463 51.382281287313916 9.135306247522799 7 51.70854222472544 4.2619206841701835 41.347911643150354 2.6816254479540222 8 53.18207929487728 3.850402874887661 40.72457365951777 2.2429441707172826 9 48.55131912435356 6.1484222864156965 41.792080489670774 3.508178099559972 10 21.56400214414298 23.16405262978039 47.26166551219849 8.010279713878138 11 15.92051106231609 17.249525512333186 55.17730959942989 11.652653825920833 12 14.42178106045281 16.255227845123834 56.42550711999643 12.89748397442693 13 14.777400493532026 15.880202371577784 56.8517914793514 12.49060565553879 14 12.767229034429759 18.18221274258486 56.15564342872309 12.894914794262297 15 12.602028255494242 18.970701618159463 56.17290432846993 12.25436579787636 16 14.709454408401367 19.393069848525627 54.1243198843819 11.773155858691101 17 14.80536215338205 18.60645173520682 53.820233715575796 12.767952395835334 18 14.373390676769448 18.560879966655534 54.588268923820316 12.477460432754702 19 14.372816976344335 19.378677450904338 53.714548119871466 12.533957452879863 20 14.71955652458269 19.97415354867387 53.462494085273335 11.84379584147011 21 15.004086991941504 18.82882300867959 54.801909973432686 11.365180025946225 22 14.440563513501042 17.98725437203375 54.50892366067765 13.063258453787558 23 13.092991101906406 18.64551325110793 54.96012657327988 13.301369073705787 24 13.122848467508973 19.082822636023746 54.537908003894174 13.256420892573098 25 13.616405437582516 20.321491740834073 53.282102716820724 12.780000104762687 26 13.318330651491708 20.533586293648312 52.82753243215805 13.320550622701925 27 13.39814984107251 19.71154841495303 53.572395131927394 13.317906612047059 28 13.085582883373439 20.171456607918913 53.55910024816285 13.1838602605448 29 13.281264615330123 20.077718947154956 53.48851015237732 13.15250628513759 30 13.85858184747002 20.606745569598466 52.612594320715 12.922078262216512 31 14.274614429663204 21.203493785701937 51.6947983580195 12.82709342661536 32 14.646546909612997 21.734366226904505 50.2975883879043 13.321498475578197 33 15.545660193247246 22.45104277535313 48.27412204503748 13.729174986362144 34 16.01754126465025 23.585373233283306 46.30730238327628 14.08978311879016 35 16.559363900923433 24.842325921206985 44.21693758214205 14.381372595727528 36 17.629414967744317 25.156963189135812 42.858739240934476 14.3548826021854 37 18.005039085212225 25.412534256774844 42.2351767658312 14.347249892181734 38 18.09293996773808 25.558004729785853 41.57215367887892 14.776901623597146 39 18.831267471360498 24.713118608073064 40.74522687482181 15.710387045744628 40 19.316742748488984 24.829654624861032 40.94811727733751 14.90548534931247 41 18.517428395327485 25.498689094528622 40.348725050579176 15.635157459564722 42 18.189471300137363 25.780051737800946 40.40025831485228 15.630218647209409 43 18.05432743477837 25.59372381712326 40.44026768362966 15.911681064468713 44 17.99615920037136 25.327127723923383 40.04334181994238 16.63337125576288 45 17.306571289386717 25.03646115636554 40.209814717211835 17.447152837035905 46 17.336877637930677 25.211938655959585 40.28571777780383 17.165465928305906 47 17.018848054444668 25.58681446852517 40.973958739964296 16.42037873706586 48 16.924611523745835 24.816484458580202 41.272831717950915 16.98607229972305 49 17.04890496802119 24.56001542505839 41.31508600143525 17.075993605485174 50 16.37727637469223 24.331084011941947 41.91632404695264 17.37531556641318 51 16.92683149495605 24.053562667168197 40.85183537990567 18.167770457970082 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 9316.0 1 10544.0 2 11772.0 3 274895.5 4 538019.0 5 337968.0 6 137917.0 7 130304.5 8 122692.0 9 121767.0 10 120842.0 11 117700.0 12 114558.0 13 109864.0 14 105170.0 15 98384.0 16 91598.0 17 85299.5 18 79001.0 19 73646.0 20 68291.0 21 63444.0 22 58597.0 23 57830.5 24 57064.0 25 56689.0 26 58624.5 27 60935.0 28 65423.0 29 69911.0 30 74162.0 31 78413.0 32 85336.5 33 92260.0 34 97512.0 35 102764.0 36 108728.5 37 114693.0 38 120738.0 39 126783.0 40 132135.0 41 137487.0 42 144953.5 43 152420.0 44 160136.5 45 167853.0 46 190228.0 47 212603.0 48 207644.5 49 202686.0 50 195783.0 51 188880.0 52 167449.0 53 146018.0 54 133322.5 55 120627.0 56 113809.5 57 106992.0 58 99203.0 59 91414.0 60 83706.0 61 75998.0 62 68159.5 63 60321.0 64 52554.5 65 44788.0 66 36694.5 67 28601.0 68 24603.0 69 20605.0 70 17281.5 71 13958.0 72 11632.0 73 9306.0 74 7261.5 75 4170.0 76 3123.0 77 2533.0 78 1943.0 79 1372.0 80 801.0 81 559.5 82 318.0 83 195.5 84 73.0 85 70.0 86 67.0 87 46.5 88 26.0 89 17.0 90 8.0 91 8.0 92 8.0 93 6.0 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4009061.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.415585799070648 #Duplication Level Percentage of deduplicated Percentage of total 1 79.91548501916006 22.708453212362876 2 7.1340973403839865 4.054391101492057 3 2.6743107730769244 2.279763216772389 4 1.5138346903055262 1.7206599811194494 5 1.0753255603716034 1.527800286133651 6 0.7888049099347969 1.344861215818825 7 0.6302364289917362 1.25359761252002 8 0.5199712795365214 1.1820230805378058 9 0.43704335622009793 1.1176958687927392 >10 4.450868488773081 28.536078899334523 >50 0.7167092308654919 13.677995988706282 >100 0.13105205175427595 5.922781065482783 >500 0.007777417934379809 1.447367257381729 >1k 0.0034769633117878833 2.0051189711852966 >5k 9.149903452073378E-4 1.7718990908490397 >10k+ 9.149903452073378E-5 9.449513151510603 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 363443 9.065539287129829 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTT 9246 0.23062757089503003 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCC 7642 0.19061820211765299 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7235 0.18046619894284474 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGT 7188 0.17929385459587668 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCT 6997 0.17452964671777257 No Hit CGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTG 6369 0.15886513076254016 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG 6138 0.15310318301467601 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTC 5853 0.14599428644263582 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 5801 0.14469722461194778 No Hit CGTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC 5681 0.14170400500266772 No Hit GAATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC 4650 0.11598725985960304 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 4545 0.11336819270148296 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 4052 0.10107104880669066 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2471748372000325E-4 0.0 0.0 0.056671624602369484 0.0 2 1.2471748372000325E-4 0.0 0.0 0.2105480560161095 0.0 3 1.2471748372000325E-4 0.0 0.0 0.44696251815574767 0.0 4 1.2471748372000325E-4 0.0 0.0 0.6464855486110089 0.0 5 1.2471748372000325E-4 0.0 0.0 1.1945440590701912 0.0 6 1.2471748372000325E-4 0.0 0.0 1.8390341279416802 0.0 7 1.2471748372000325E-4 0.0 0.0 2.301835766529868 0.0 8 1.2471748372000325E-4 0.0 0.0 2.790603585228561 0.0 9 1.2471748372000325E-4 0.0 0.0 3.172563350869443 0.0 10 1.2471748372000325E-4 0.0 0.0 3.6964017259902007 0.0 11 1.2471748372000325E-4 0.0 0.0 4.277684974112392 0.0 12 1.2471748372000325E-4 0.0 0.0 4.691198263134435 0.0 13 1.496609804640039E-4 0.0 0.0 4.9093041986639765 0.0 14 1.496609804640039E-4 0.0 0.0 5.050135181280604 0.0 15 1.496609804640039E-4 0.0 0.0 5.188347096739112 0.0 16 1.496609804640039E-4 0.0 0.0 5.391636595202717 0.0 17 1.496609804640039E-4 0.0 0.0 5.637629360092052 0.0 18 1.496609804640039E-4 0.0 0.0 5.895794551392458 0.0 19 1.496609804640039E-4 0.0 0.0 6.069725554188375 0.0 20 1.496609804640039E-4 0.0 0.0 6.239166727570371 0.0 21 1.496609804640039E-4 0.0 0.0 6.417437898799744 0.0 22 1.496609804640039E-4 0.0 0.0 6.610949546539701 0.0 23 1.496609804640039E-4 0.0 0.0 6.793560886202529 0.0 24 1.7460447720800455E-4 0.0 0.0 6.9375347494089015 0.0 25 2.2449147069600588E-4 0.0 0.0 7.061853137181001 0.0 26 2.494349674400065E-4 0.0 0.0 7.18467491514846 0.0 27 2.494349674400065E-4 0.0 0.0 7.309093076907535 0.0 28 2.494349674400065E-4 0.0 0.0 7.430917115005235 0.0 29 2.743784641840072E-4 0.0 0.0 7.560523524087062 0.0 30 2.743784641840072E-4 0.0 0.0 7.707989476837594 0.0 31 3.242654576720085E-4 0.0 0.0 7.831484729217141 0.0 32 3.242654576720085E-4 0.0 0.0 7.960567324867344 0.0 33 3.242654576720085E-4 0.0 0.0 8.094139749931468 0.0 34 3.242654576720085E-4 0.0 0.0 8.232675930847646 0.0 35 3.242654576720085E-4 0.0 0.0 8.362157622445755 0.0 36 3.242654576720085E-4 0.0 0.0 8.477396577403038 0.0 37 3.242654576720085E-4 0.0 0.0 8.607277364949049 0.0 38 3.242654576720085E-4 0.0 0.0 8.759307977603733 0.0 39 3.242654576720085E-4 0.0 0.0 8.947980586975355 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 135030 0.0 44.590088 1 CGTTATT 10040 0.0 44.282867 1 GTTATTT 11225 0.0 40.069042 2 GTTTTTT 153140 0.0 39.435974 2 CGTTGTT 475 0.0 37.42105 1 CTATGCG 115 0.0 37.173916 1 TGCGTAG 185 0.0 36.48649 1 TAGCCGT 210 0.0 36.42857 44 CGTTTCT 1305 0.0 36.03448 1 CGCGTAT 25 0.002107733 36.0 36 TACGGGA 1470 0.0 35.969387 4 CGACGGT 145 0.0 35.689655 28 ACGTAGG 290 0.0 34.91379 2 CGTTTTC 1115 0.0 34.910316 1 TATGGGA 2770 0.0 34.765343 4 CGGTCTA 175 0.0 34.714287 31 ACGGGAT 2185 0.0 34.70252 5 CGAACGG 255 0.0 34.411766 2 TCGACGG 165 0.0 34.090908 2 CGTTCTG 880 0.0 33.494316 1 >>END_MODULE