SRR2935202.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935202.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	785762
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37367	4.755511210773745	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	5429	0.6909216785744284	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3684	0.46884425563974846	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	2608	0.3319071169132638	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	1878	0.2390036677772659	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	1871	0.23811281278555085	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	1623	0.20655109307907482	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1306	0.16620808845426477	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGT	1292	0.1644263784708347	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1214	0.1544997085631527	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	1185	0.15080902359747608	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC	1156	0.14711833863179946	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	1016	0.1293012387974985	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	954	0.12141080887087949	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	950	0.12090174887561372	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	950	0.12090174887561372	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	917	0.11670200391467137	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	913	0.11619294391940563	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	25	3.889676E-5	45.0	6
CAACGTA	20	7.0319226E-4	45.0	33
ACGTTAG	20	7.0319226E-4	45.0	1
CGACCTC	20	7.0319226E-4	45.0	12
GCTTGCG	25	3.889676E-5	45.0	1
TGTTACG	20	7.0319226E-4	45.0	1
TATAGCG	25	3.889676E-5	45.0	1
GTCGTAG	30	2.1646229E-6	44.999996	1
CGTTATT	1120	0.0	44.598213	1
CGTTTTT	15730	0.0	44.2562	1
TCGTAGG	75	0.0	42.0	2
TAGCACG	60	3.6379788E-12	41.249996	1
ACCTGGT	50	1.0804797E-9	40.5	11
GGATTAC	50	1.0804797E-9	40.5	8
ATAGGGT	90	0.0	40.0	4
ACAACGG	40	3.4563527E-7	39.375	2
TTTGGCG	40	3.4563527E-7	39.375	1
TACGGGA	325	0.0	38.76923	4
GTGTACG	35	6.2457675E-6	38.571426	1
ATTTGCG	35	6.2457675E-6	38.571426	1