SRR2935199.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935199.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1820186
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	119724	6.577569545090446	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6657	0.365731853777581	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCC	5626	0.30908929087466885	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCG	2614	0.14361169682658806	No Hit
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	2319	0.12740456195136102	Illumina PCR Primer Index 7 (95% over 23bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGT	2174	0.119438343114385	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTC	1974	0.10845045506338363	No Hit
CGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG	1960	0.10768130289981354	Illumina PCR Primer Index 7 (95% over 22bp)
CGTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTT	1945	0.10685721129598844	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCT	1916	0.10526396752859324	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAA	20	7.0343725E-4	45.000004	37
TATCGCG	40	6.8193913E-9	45.000004	1
CCCGATC	25	3.8917064E-5	45.0	41
CGTTTTT	43820	0.0	44.173325	1
CGTTATT	3415	0.0	44.143486	1
TCGATAG	80	0.0	42.187504	1
GATCGAC	115	0.0	41.086956	9
ACTACGG	105	0.0	40.714287	2
CGACGGT	205	0.0	39.512196	28
ACGGGTA	145	0.0	38.793106	5
TCACGAC	210	0.0	38.57143	25
CTTAACG	35	6.2503004E-6	38.571426	1
TATCACG	35	6.2503004E-6	38.571426	1
CGTAAGG	275	0.0	38.45454	2
GTTTTTT	51390	0.0	38.34939	2
GCGTACG	95	0.0	37.894737	1
GTTATTT	4110	0.0	37.883213	2
TAACGGG	455	0.0	37.582417	3
CACGACG	210	0.0	37.5	26
TCGCTAT	60	1.5643309E-10	37.499996	23