##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935199.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1820186 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.07764700970121 33.0 31.0 34.0 30.0 34.0 2 32.21506153766703 34.0 31.0 34.0 30.0 34.0 3 32.12999990110901 33.0 31.0 34.0 30.0 34.0 4 35.83716609181699 37.0 35.0 37.0 35.0 37.0 5 33.30378708549566 37.0 35.0 37.0 30.0 37.0 6 34.370259413049 37.0 35.0 37.0 28.0 37.0 7 35.66339483986801 37.0 35.0 37.0 32.0 37.0 8 35.665666585722555 37.0 35.0 37.0 35.0 37.0 9 37.7987974855317 39.0 38.0 39.0 35.0 39.0 10 37.365047308352004 39.0 37.0 39.0 34.0 39.0 11 37.259111431469094 39.0 37.0 39.0 34.0 39.0 12 37.439931413602785 39.0 37.0 39.0 35.0 39.0 13 37.39361746546781 39.0 37.0 39.0 35.0 39.0 14 38.48594154663315 40.0 38.0 41.0 34.0 41.0 15 38.6348038057649 40.0 38.0 41.0 34.0 41.0 16 38.61506461427568 40.0 38.0 41.0 34.0 41.0 17 38.54176935763708 40.0 38.0 41.0 34.0 41.0 18 38.18283296322464 39.0 38.0 41.0 34.0 41.0 19 37.720196177753266 39.0 37.0 41.0 34.0 41.0 20 37.254038872950346 39.0 35.0 40.0 34.0 41.0 21 37.13073993536924 38.0 35.0 40.0 33.0 41.0 22 37.101824209174225 38.0 35.0 40.0 33.0 41.0 23 36.912133155622556 38.0 35.0 40.0 33.0 41.0 24 36.62972080875251 38.0 35.0 40.0 33.0 41.0 25 36.42075699955939 38.0 35.0 40.0 32.0 41.0 26 36.655306106079266 38.0 35.0 40.0 33.0 41.0 27 36.563752275866314 38.0 35.0 40.0 33.0 41.0 28 36.531939043592246 38.0 35.0 40.0 33.0 41.0 29 36.470564546700174 38.0 35.0 40.0 33.0 41.0 30 36.08867390475479 38.0 35.0 40.0 31.0 41.0 31 35.72031759391623 38.0 35.0 40.0 30.0 41.0 32 35.08855468616944 38.0 35.0 40.0 24.0 41.0 33 34.43001759160877 38.0 34.0 40.0 18.0 41.0 34 33.83138701209656 38.0 34.0 40.0 15.0 41.0 35 33.37396343011099 38.0 33.0 40.0 10.0 41.0 36 33.09620610201375 38.0 33.0 40.0 10.0 41.0 37 33.00184321822056 38.0 33.0 40.0 10.0 41.0 38 32.86105705680628 38.0 33.0 40.0 10.0 41.0 39 32.69992901824319 38.0 32.0 40.0 10.0 41.0 40 32.600074388002106 37.0 32.0 40.0 10.0 41.0 41 32.470112395106874 37.0 31.0 40.0 8.0 41.0 42 32.4522587252072 37.0 32.0 40.0 8.0 41.0 43 32.33674360752143 37.0 31.0 40.0 8.0 41.0 44 32.20922202456232 37.0 31.0 40.0 8.0 41.0 45 32.163838201150874 37.0 31.0 40.0 8.0 41.0 46 32.07055322917548 36.0 31.0 40.0 8.0 41.0 47 31.98259024077759 36.0 31.0 40.0 8.0 41.0 48 31.874962229134823 36.0 30.0 40.0 8.0 41.0 49 31.80798445873114 36.0 30.0 40.0 8.0 41.0 50 31.695433323847123 36.0 30.0 40.0 8.0 41.0 51 30.9218590847309 35.0 27.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 19.0 9 37.0 10 44.0 11 58.0 12 66.0 13 96.0 14 136.0 15 194.0 16 365.0 17 691.0 18 1278.0 19 2281.0 20 3901.0 21 6233.0 22 9519.0 23 15510.0 24 26605.0 25 45036.0 26 64814.0 27 69470.0 28 61863.0 29 52504.0 30 46661.0 31 46594.0 32 51184.0 33 64212.0 34 93184.0 35 129606.0 36 163007.0 37 188241.0 38 300872.0 39 375763.0 40 139.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.085339630125713 15.130376785669156 18.60178025762202 35.18250332658311 2 49.882319718973775 17.880425407073783 20.05729084829792 12.179964025654522 3 23.440241821440228 18.170450712179964 46.901745206259136 11.487562260120669 4 20.65255968346092 20.126789240220504 46.39278623173676 12.827864844581818 5 17.13764417482609 28.470881547270444 42.39929325904056 11.992181018862908 6 19.535915560277907 26.091948844788387 43.881943933202436 10.490191661731274 7 59.885693000605436 5.2071052079293 31.891575915867936 3.015625875597329 8 60.87658074504474 4.6265052033143865 31.530294156751015 2.9666198948898628 9 55.25391361102656 8.125708032036288 32.79126418948393 3.829114167453216 10 20.737660876415926 33.927246995636715 36.913370391817104 8.421721736130264 11 20.37769766386512 20.849023121812827 45.8023520673162 12.970927147005856 12 20.021580212132168 19.026242373032208 46.86493578128829 14.08724163354734 13 19.107332986848597 18.49882374658414 49.12184798696397 13.271995279603294 14 14.456379732620734 21.238763510981844 49.504061672818054 14.800795083579372 15 13.597676281434975 22.344914201076154 49.86770582786594 14.18970368962293 16 17.049026857694763 22.77937529461275 47.23506279028627 12.936535057406221 17 16.80537044016381 22.277778205084537 46.80384312372472 14.113008231026939 18 15.983036898426864 21.784037455512788 48.63915006488348 13.593775581176867 19 15.847830935959292 22.682901637524957 47.82505743918479 13.644209987330965 20 15.648840283355659 24.357785413139098 47.2952214773655 12.698152826139747 21 16.379260141545974 22.14636306399456 49.15882223025559 12.315554564203877 22 16.0475907407265 20.189310323230703 48.861105403513704 14.901993532529092 23 13.934564929078677 21.846173962441203 49.160305595142475 15.058955513337649 24 14.142785407645153 22.292721732833897 48.060692698438515 15.50380016108244 25 14.982864388584463 23.82608151035114 46.179895900748605 15.01115820031579 26 14.578674926628377 23.791689420751506 46.12451694497155 15.50511870764856 27 14.554446633475921 22.521544501496003 47.85104379442541 15.072965070602676 28 13.606686349636796 22.972322608788332 47.39971629273052 16.02127474884435 29 15.502756311717594 22.694109283336978 46.60919268690123 15.193941718044199 30 16.93848870390169 21.985500382927896 46.077983239075564 14.998027674094846 31 16.688239553540132 23.56385556201399 44.48210237854813 15.26580250589775 32 17.38761862798637 24.05979388919594 43.558515448421204 14.994072034396485 33 17.621715582912955 23.618685123388488 42.03586886175369 16.723730431944865 34 16.670933629859803 25.18775553707149 41.58256354020963 16.55874729285908 35 17.44772237562535 26.472019892472527 39.44217788731481 16.63807984458731 36 19.08947766876572 26.673867395969424 38.372342167229064 15.864312768035793 37 18.498549049382866 27.421703056720574 38.3332252857675 15.74652260812906 38 17.869602337343547 27.3736859859377 38.21999509940193 16.536716577316824 39 17.577214636306397 26.428068340268524 37.635549333969166 18.359167689455912 40 18.648204084637506 26.394500342272714 38.128795628578615 16.828499944511165 41 17.91157606969837 27.154642437640987 37.43397652767354 17.499804964987096 42 18.331313393246624 27.11508604065738 37.73553911523328 16.818061450862714 43 18.482726490589425 26.16001881126434 38.058473145052204 17.298781553094024 44 19.02574791806991 25.349497249182228 37.02440300057247 18.600351832175395 45 18.74396352900198 24.703409431783346 37.19185841446973 19.360768624744942 46 18.630623463755903 25.398942745411734 37.648075526347306 18.322358264485057 47 17.017546558428645 26.471360619189465 39.15198776388787 17.359105058494023 48 17.04391748975105 26.103541066682194 38.99508072251957 17.85746072104719 49 18.25544202625446 24.85531698408844 38.994421449236505 17.894819540420595 50 16.572042637400795 24.80241030312287 39.211651996004804 19.413895063471536 51 16.716368546950697 24.581608692737994 38.17532933447461 20.5266934258367 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8903.0 1 10107.0 2 11311.0 3 96638.0 4 181965.0 5 114003.0 6 46041.0 7 43584.0 8 41127.0 9 40485.0 10 39843.0 11 39106.0 12 38369.0 13 36686.0 14 35003.0 15 33538.5 16 32074.0 17 29878.0 18 27682.0 19 26584.5 20 25487.0 21 24368.5 22 23250.0 23 23372.5 24 23495.0 25 24949.5 26 26642.5 27 26881.0 28 30599.5 29 34318.0 30 36112.0 31 37906.0 32 42419.0 33 46932.0 34 50507.0 35 54082.0 36 54717.5 37 55353.0 38 58241.0 39 61129.0 40 65381.5 41 69634.0 42 74747.0 43 79860.0 44 83647.5 45 87435.0 46 96503.5 47 105572.0 48 114237.5 49 122903.0 50 121965.0 51 121027.0 52 106263.0 53 91499.0 54 78422.0 55 65345.0 56 59852.5 57 54360.0 58 48492.0 59 42624.0 60 37405.5 61 32187.0 62 28100.5 63 24014.0 64 20696.5 65 17379.0 66 14167.5 67 10956.0 68 9030.0 69 7104.0 70 5702.0 71 4300.0 72 3665.0 73 3030.0 74 2274.5 75 1175.0 76 831.0 77 645.5 78 460.0 79 359.5 80 259.0 81 203.0 82 147.0 83 112.0 84 77.0 85 56.0 86 35.0 87 45.5 88 56.0 89 32.5 90 9.0 91 7.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1820186.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.68113683490883 #Duplication Level Percentage of deduplicated Percentage of total 1 77.33785064276928 25.274888793740846 2 8.185643342025838 5.350322602850137 3 3.2793766801839306 3.215212740549003 4 1.8746705379747826 2.4506545748770407 5 1.3038663807594835 2.1305917802019008 6 0.9415703696267947 1.846295405368138 7 0.7590244703477984 1.7364047803536422 8 0.6103599557515599 1.5957805785972505 9 0.5163710819322895 1.5188034587597166 >10 4.699703265959052 31.8161997253031 >50 0.4073594023517834 8.876641780336923 >100 0.07845082921037884 4.319190972579152 >500 0.0012203420530462836 0.27199636953521433 >1k 0.004009695317152074 2.0759806696176377 >5k 3.486691580132239E-4 0.6998180576039039 >10k+ 1.7433457900661194E-4 6.821217709726435 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 119724 6.577569545090446 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6657 0.365731853777581 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCC 5626 0.30908929087466885 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCG 2614 0.14361169682658806 No Hit CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC 2319 0.12740456195136102 Illumina PCR Primer Index 7 (95% over 23bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGT 2174 0.119438343114385 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTC 1974 0.10845045506338363 No Hit CGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG 1960 0.10768130289981354 Illumina PCR Primer Index 7 (95% over 22bp) CGTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTT 1945 0.10685721129598844 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCT 1916 0.10526396752859324 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10213241943405783 0.0 2 0.0 0.0 0.0 0.40852967773623133 0.0 3 0.0 0.0 0.0 0.6477909400467864 0.0 4 0.0 0.0 0.0 0.9092477362203643 0.0 5 0.0 0.0 0.0 1.5712130518529426 0.0 6 0.0 0.0 0.0 2.1672510391795123 0.0 7 0.0 0.0 0.0 2.713019438672751 0.0 8 0.0 0.0 0.0 3.478270901984742 0.0 9 0.0 0.0 0.0 3.9119079039175118 0.0 10 0.0 0.0 0.0 4.7878623393433415 0.0 11 0.0 0.0 0.0 6.076302092203764 0.0 12 0.0 0.0 0.0 6.988681376518663 0.0 13 0.0 0.0 0.0 7.383695951952163 0.0 14 5.4939440255006906E-5 0.0 0.0 7.5999375887958704 0.0 15 5.4939440255006906E-5 0.0 0.0 7.890841924946132 0.0 16 5.4939440255006906E-5 0.0 0.0 8.395185986487096 0.0 17 5.4939440255006906E-5 0.0 0.0 8.99578394735483 0.0 18 5.4939440255006906E-5 0.0 0.0 9.607314856833312 0.0 19 5.4939440255006906E-5 0.0 0.0 10.029469515752785 0.0 20 5.4939440255006906E-5 0.0 0.0 10.523649780846572 0.0 21 5.4939440255006906E-5 0.0 0.0 11.038707033237262 0.0 22 5.4939440255006906E-5 0.0 0.0 11.598045474473487 0.0 23 5.4939440255006906E-5 0.0 0.0 12.062393623508806 0.0 24 5.4939440255006906E-5 0.0 0.0 12.388953656384567 0.0 25 5.4939440255006906E-5 0.0 0.0 12.663925554860876 0.0 26 5.4939440255006906E-5 0.0 0.0 12.927030534242105 0.0 27 5.4939440255006906E-5 0.0 0.0 13.210133469876155 0.0 28 5.4939440255006906E-5 0.0 0.0 13.462909834489443 0.0 29 5.4939440255006906E-5 0.0 0.0 13.719037504958285 0.0 30 5.4939440255006906E-5 0.0 0.0 14.009007870624211 0.0 31 5.4939440255006906E-5 0.0 0.0 14.245741918683036 0.0 32 5.4939440255006906E-5 0.0 0.0 14.487090879723281 0.0 33 5.4939440255006906E-5 0.0 0.0 14.708606702831469 0.0 34 5.4939440255006906E-5 0.0 0.0 14.934407802279548 0.0 35 5.4939440255006906E-5 0.0 0.0 15.157132293073346 0.0 36 5.4939440255006906E-5 0.0 0.0 15.375022113124702 0.0 37 1.0987888051001381E-4 0.0 0.0 15.59653793623289 0.0 38 1.6481832076502073E-4 0.0 0.0 15.861950372104829 0.0 39 1.6481832076502073E-4 0.0 0.0 16.2835006971815 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCGAA 20 7.0343725E-4 45.000004 37 TATCGCG 40 6.8193913E-9 45.000004 1 CCCGATC 25 3.8917064E-5 45.0 41 CGTTTTT 43820 0.0 44.173325 1 CGTTATT 3415 0.0 44.143486 1 TCGATAG 80 0.0 42.187504 1 GATCGAC 115 0.0 41.086956 9 ACTACGG 105 0.0 40.714287 2 CGACGGT 205 0.0 39.512196 28 ACGGGTA 145 0.0 38.793106 5 TCACGAC 210 0.0 38.57143 25 CTTAACG 35 6.2503004E-6 38.571426 1 TATCACG 35 6.2503004E-6 38.571426 1 CGTAAGG 275 0.0 38.45454 2 GTTTTTT 51390 0.0 38.34939 2 GCGTACG 95 0.0 37.894737 1 GTTATTT 4110 0.0 37.883213 2 TAACGGG 455 0.0 37.582417 3 CACGACG 210 0.0 37.5 26 TCGCTAT 60 1.5643309E-10 37.499996 23 >>END_MODULE