##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935197.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 400709 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.527767032934126 31.0 31.0 34.0 30.0 34.0 2 31.643207414857166 31.0 31.0 34.0 30.0 34.0 3 31.650025330102395 31.0 31.0 34.0 30.0 34.0 4 35.47746369559955 37.0 35.0 37.0 33.0 37.0 5 32.88766161977894 37.0 35.0 37.0 28.0 37.0 6 33.93590361084977 36.0 35.0 37.0 26.0 37.0 7 35.261893294136144 37.0 35.0 37.0 32.0 37.0 8 35.24485100159966 37.0 35.0 37.0 33.0 37.0 9 37.32589984252912 39.0 37.0 39.0 34.0 39.0 10 36.73178541036014 39.0 37.0 39.0 32.0 39.0 11 36.55161226725629 39.0 35.0 39.0 32.0 39.0 12 36.95880302164414 39.0 37.0 39.0 33.0 39.0 13 36.9288860494773 39.0 37.0 39.0 33.0 39.0 14 37.85374423833755 39.0 37.0 41.0 33.0 41.0 15 37.977277775143556 39.0 37.0 41.0 33.0 41.0 16 37.97125844440729 40.0 37.0 41.0 33.0 41.0 17 37.94691908592021 39.0 37.0 41.0 33.0 41.0 18 37.85697601002224 39.0 37.0 40.0 33.0 41.0 19 37.62277612931079 39.0 36.0 40.0 33.0 41.0 20 37.45384555874712 39.0 35.0 40.0 33.0 41.0 21 37.37518997576795 39.0 35.0 40.0 33.0 41.0 22 37.32394081490558 39.0 35.0 40.0 33.0 41.0 23 37.05972913011687 39.0 35.0 40.0 32.0 41.0 24 36.75986064700319 38.0 35.0 40.0 32.0 41.0 25 36.58533249814703 38.0 35.0 40.0 31.0 41.0 26 36.89728206753529 38.0 35.0 40.0 32.0 41.0 27 36.747667259782034 39.0 35.0 40.0 32.0 41.0 28 36.842057453164266 39.0 35.0 40.0 32.0 41.0 29 36.87973566852754 39.0 35.0 40.0 32.0 41.0 30 36.639918244910895 39.0 35.0 40.0 31.0 41.0 31 36.49285142085653 38.0 35.0 40.0 31.0 41.0 32 36.18129615256957 38.0 35.0 40.0 30.0 41.0 33 36.0650746551737 38.0 35.0 40.0 30.0 41.0 34 35.966080122982014 39.0 35.0 40.0 30.0 41.0 35 35.72282629040026 39.0 35.0 40.0 27.0 41.0 36 35.633499621920144 39.0 35.0 40.0 27.0 41.0 37 35.5357279222578 38.0 35.0 40.0 27.0 41.0 38 35.331340199496395 38.0 35.0 40.0 25.0 41.0 39 35.287705042811616 38.0 35.0 40.0 25.0 41.0 40 35.24614870142672 38.0 35.0 40.0 24.0 41.0 41 35.13764851800184 38.0 35.0 40.0 24.0 41.0 42 35.225565185708334 38.0 35.0 40.0 24.0 41.0 43 35.09236877634393 38.0 35.0 40.0 23.0 41.0 44 34.93985660416911 38.0 35.0 40.0 23.0 41.0 45 34.893533711496374 38.0 35.0 40.0 23.0 41.0 46 34.76094871839664 38.0 34.0 40.0 23.0 41.0 47 34.651812162941184 38.0 34.0 40.0 22.0 41.0 48 34.59850415139166 38.0 34.0 40.0 22.0 41.0 49 34.602125233024466 38.0 34.0 40.0 22.0 41.0 50 34.50584339258664 38.0 34.0 40.0 21.0 41.0 51 33.593819954131305 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 10.0 10 13.0 11 6.0 12 14.0 13 22.0 14 21.0 15 42.0 16 45.0 17 108.0 18 208.0 19 340.0 20 588.0 21 967.0 22 1568.0 23 2328.0 24 3431.0 25 4734.0 26 6304.0 27 6899.0 28 7082.0 29 7159.0 30 7908.0 31 9419.0 32 12170.0 33 16186.0 34 24017.0 35 36094.0 36 46919.0 37 59029.0 38 86699.0 39 60369.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.71823442947376 24.89362604783022 23.91810515860637 17.470034364089653 2 35.62360715631543 24.74713570196826 24.783820677848514 14.845436463867795 3 25.97221425024145 24.74414101005967 35.8409718773474 13.442672862351483 4 23.641844830038757 26.37225517769753 34.83550406903763 15.150395923226082 5 17.93520984055761 33.88044690785583 32.74670646279469 15.437636788791867 6 21.367376325463116 33.37184839871328 32.77690293953967 12.483872336283937 7 65.21790126999892 8.028269891617109 21.12655318448051 5.627275653903456 8 63.254631166257816 7.741029026051324 20.82583620532606 8.17850360236481 9 58.26048329336252 10.00950814680978 23.609402334362343 8.120606225465362 10 27.044563511176438 31.236383510228123 29.156569979710962 12.562482998884478 11 16.921506629499213 26.37300385067468 36.94351761502737 19.761971904798745 12 17.611034441452524 22.40653441774455 42.314747110746204 17.667684030056723 13 18.843350161838142 25.0892792525249 41.83509729005338 14.232273295583578 14 15.400452697593517 28.1293906550639 38.06078725459124 18.409369392751348 15 12.110284520687083 27.753307262876554 42.40883034820781 17.727577868228565 16 12.687760943727245 29.04376991782066 37.384236440908495 20.884232697543602 17 12.45267762890277 28.938456585701843 36.384508458756855 22.224357326638533 18 12.414744864727272 28.63224933804831 41.080684486747245 17.87232131047718 19 12.51307058239271 29.34049397443032 38.89555762411126 19.250877819065707 20 13.07931691077565 31.937390974497703 38.13515543698794 16.848136677738708 21 13.832731483445592 30.21669091535254 39.35798796632968 16.59258963487219 22 12.255527078253795 29.10116817940201 34.83874831860527 23.804556423738923 23 11.449954954842543 28.48925279941304 36.3665403073053 23.694251938439116 24 14.80925060330564 27.89380822492133 35.057360827932484 22.239580343840544 25 11.395800942828837 31.183477286509664 32.999258813752625 24.42146295690888 26 11.840263133595702 30.405356505593833 34.77635890384294 22.978021456967525 27 16.724855194168338 28.31031995787467 35.26723881919298 19.697586028764018 28 13.162918726557177 27.465068166674566 35.21508126845167 24.156931838316584 29 14.643793875355932 26.73685891756861 34.35485601770861 24.264491189366847 30 20.32023238809211 28.448574900988 31.99528835139715 19.235904359522745 31 17.280869658530253 32.92214549710638 29.084447816245707 20.712537028117662 32 15.39820667866207 34.352360441118115 27.351020316489024 22.898412563730787 33 17.931716033330922 28.221976546571202 30.587284039040803 23.259023381057077 34 15.283659713158427 26.93301123758139 32.597221425024145 25.186107624236044 35 15.270682714887862 29.245662063991574 28.25691461883811 27.226740602282458 36 21.263061223980493 26.742099628408646 29.350226723133243 22.644612424477614 37 20.778420250106684 29.39265152517163 31.51688631899957 18.312041905722108 38 16.943717261154603 33.742691080060595 28.393422658338096 20.92016900044671 39 17.022327923755142 27.265921154753197 34.56099064408336 21.150760277408292 40 16.962434085583304 26.231005542675607 36.32486417824406 20.481696193497026 41 16.218253146298185 29.584311807321523 27.991135711950566 26.206299334429723 42 19.66164972586091 26.045833759661 28.58633072878323 25.706185785694856 43 22.63737525236518 24.59016393442623 29.299316960687182 23.473143852521407 44 19.779940056250297 24.45839749044818 29.60477553536357 26.156886917937953 45 20.93888582487541 22.772635503569923 31.12707725556451 25.16140141599016 46 21.829806667681535 25.024643818831123 33.387071415915294 19.758478097572056 47 15.622309456488374 26.645021699038455 36.263472994117926 21.469195850355245 48 16.707386158034883 25.154413801536773 33.572742314247996 24.565457726180345 49 20.10037209046964 21.52759234257279 35.74364439031817 22.628391176639408 50 18.34074103651278 20.58950510220634 34.38330559084024 26.686448270440643 51 17.225467858221304 20.173742042230145 30.67862214225286 31.922167957295695 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5208.0 1 5509.0 2 5810.0 3 10397.0 4 14984.0 5 9590.0 6 4196.0 7 4324.5 8 4453.0 9 4853.5 10 5254.0 11 5901.0 12 6548.0 13 6432.0 14 6316.0 15 5953.5 16 5591.0 17 4986.0 18 4381.0 19 3936.5 20 3492.0 21 3412.5 22 3333.0 23 3376.5 24 3420.0 25 3897.0 26 4012.5 27 3651.0 28 3769.0 29 3887.0 30 4283.5 31 4680.0 32 5055.0 33 5430.0 34 5990.0 35 6550.0 36 7032.5 37 7515.0 38 8467.5 39 9420.0 40 10895.0 41 12370.0 42 16333.0 43 20296.0 44 24028.0 45 27760.0 46 36199.5 47 44639.0 48 52669.0 49 60699.0 50 57132.0 51 53565.0 52 40932.0 53 28299.0 54 21074.0 55 13849.0 56 10327.5 57 6806.0 58 5408.5 59 4011.0 60 3589.0 61 3167.0 62 2801.5 63 2436.0 64 2007.5 65 1579.0 66 1290.0 67 1001.0 68 850.0 69 699.0 70 538.0 71 377.0 72 323.0 73 269.0 74 236.0 75 156.0 76 109.0 77 73.5 78 38.0 79 29.5 80 21.0 81 15.0 82 9.0 83 9.0 84 9.0 85 5.0 86 1.0 87 1.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 400709.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.03228533500282 #Duplication Level Percentage of deduplicated Percentage of total 1 72.20235257626759 29.62627532767888 2 11.465640063759603 9.409228292892479 3 4.982550244112159 6.133362699371941 4 2.719534826924792 4.463549159874223 5 1.8699426574123725 3.836401033951895 6 1.306885214512905 3.2174692213193925 7 0.9994936848897561 2.8708057048250915 8 0.7961562500867785 2.613448833984525 9 0.6129932518401717 2.263726261614345 >10 2.8701812309891133 18.861656296346876 >50 0.0997587981313217 2.7667888637120153 >100 0.0634268901699144 4.930695697395093 >500 0.00492636040154675 1.3869318788050458 >1k 0.005542155451740093 5.25336139410379 >5k 6.157950501933438E-4 2.3662993341244767 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9365 2.337107476997023 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4278 1.0676076654130553 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCC 3175 0.7923455674816388 No Hit GCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC 3046 0.7601526294642746 TruSeq Adapter, Index 20 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC 2855 0.7124871165858516 TruSeq Adapter, Index 20 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGCT 2161 0.539294101205613 TruSeq Adapter, Index 27 (95% over 23bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1620 0.4042834076599228 No Hit TCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC 1599 0.39904269681988674 TruSeq Adapter, Index 20 (95% over 21bp) AAAAGGTGGGAGAGTTTATTTGTAACCTTAATTATATTAAAAGTTATTCTG 1044 0.2605381960475058 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCG 1013 0.25280190861697643 No Hit ACTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC 967 0.24132225630070697 TruSeq Adapter, Index 27 (95% over 22bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 833 0.20788152998809611 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGC 696 0.1736921306983372 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 678 0.16920009283544918 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 627 0.15647265222393308 No Hit ACCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTG 622 0.15522486392868642 TruSeq Adapter, Index 27 (95% over 21bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 548 0.13675759715903563 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTC 518 0.12927086738755555 No Hit GCCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTG 493 0.12303192591132218 No Hit GAATCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTC 483 0.12053634932082884 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGT 468 0.11679298443508881 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCG 443 0.11055404295885543 No Hit AATGTAGGGATTTTTGGATACTAATATTTGACATGGTTAATTCTTATTAAT 441 0.11005492764075675 No Hit AGCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTG 423 0.10556288977786872 TruSeq Adapter, Index 27 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTG 420 0.10481421680072073 TruSeq Adapter, Index 27 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5807206726078027 0.0 2 0.0 0.0 0.0 2.87490423224834 0.0 3 0.0 0.0 0.0 3.84318794935976 0.0 4 0.0 0.0 0.0 5.1047019158541485 0.0 5 0.0 0.0 0.0 8.507171039332782 0.0 6 0.0 0.0 0.0 10.22013481104742 0.0 7 0.0 0.0 0.0 12.177165973312304 0.0 8 0.0 0.0 0.0 15.154388845770871 0.0 9 0.0 0.0 0.0 16.247950507725058 0.0 10 0.0 0.0 0.0 19.440042524625103 0.0 11 0.0 0.0 0.0 24.75587022003499 0.0 12 0.0 0.0 0.0 28.389679293452357 0.0 13 0.0 0.0 0.0 29.696612753893724 0.0 14 0.0 0.0 0.0 30.22018472257923 0.0 15 0.0 0.0 0.0 31.205188802846955 0.0 16 0.0 0.0 0.0 33.386073185279095 0.0 17 0.0 0.0 0.0 36.218552615489045 0.0 18 0.0 0.0 0.0 39.04678956549516 0.0 19 0.0 0.0 0.0 40.81665248347304 0.0 20 0.0 0.0 0.0 42.4457648817471 0.0 21 0.0 0.0 0.0 44.34864203199828 0.0 22 0.0 0.0 0.0 46.242285548864636 0.0 23 0.0 0.0 0.0 48.02886882999883 0.0 24 0.0 0.0 0.0 49.22874205470803 0.0 25 0.0 0.0 0.0 50.116169090287464 0.0 26 0.0 0.0 0.0 50.86633941338977 0.0 27 0.0 0.0 0.0 51.5124441926685 0.0 28 0.0 0.0 0.0 52.214449887574276 0.0 29 0.0 0.0 0.0 52.86903962726068 0.0 30 0.0 0.0 0.0 53.53386123096811 0.0 31 2.4955765904933504E-4 0.0 0.0 54.089626137670976 0.0 32 2.4955765904933504E-4 0.0 0.0 54.578260034089574 0.0 33 2.4955765904933504E-4 0.0 0.0 54.99327442108862 0.0 34 2.4955765904933504E-4 0.0 0.0 55.43898440015073 0.0 35 2.4955765904933504E-4 0.0 0.0 55.91813510552546 0.0 36 2.4955765904933504E-4 0.0 0.0 56.27026096244407 0.0 37 2.4955765904933504E-4 0.0 0.0 56.65557798801624 0.0 38 2.4955765904933504E-4 0.0 0.0 57.00670561429865 0.0 39 2.4955765904933504E-4 0.0 0.0 57.33537305126663 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGG 30 2.161949E-6 45.000004 2 TTCGGGA 30 2.161949E-6 45.000004 4 TCCGGAT 35 1.2092823E-7 45.0 27 TCACGAC 35 1.2092823E-7 45.0 25 GTCATAG 20 7.027781E-4 45.0 1 CTCCGGA 35 1.2092823E-7 45.0 26 CGAAAGG 20 7.027781E-4 45.0 2 GGATCGT 35 1.2092823E-7 45.0 8 TCGGGAT 45 3.8380676E-10 45.0 5 GATCATC 20 7.027781E-4 45.0 7 GATTTCC 50 2.1827873E-11 45.0 9 ACGGGTC 20 7.027781E-4 45.0 5 ATCGTGC 20 7.027781E-4 45.0 10 CGTTATT 210 0.0 45.0 1 CGTTAGG 55 1.8189894E-12 45.0 2 CTAACGG 25 3.8862418E-5 45.0 2 TACGCGG 20 7.027781E-4 45.0 2 AGGTTTA 35 1.2092823E-7 45.0 6 GTGCTAG 40 6.7957444E-9 45.0 1 CAGATAT 25 3.8862418E-5 45.0 18 >>END_MODULE