SRR2935187.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935187.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1542409
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73017	4.733958372908872	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	6449	0.41811218684538276	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3652	0.23677247733901968	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	3257	0.21116318693679823	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	2939	0.19054608732184525	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	2485	0.16111161177093752	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	2402	0.15573041910414165	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1819	0.11793240314339451	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGT	1786	0.11579289280599374	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTC	1706	0.11060620107896155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGAA	20	7.0340384E-4	45.0	9
TCGTAAT	20	7.0340384E-4	45.0	28
CGCGTCA	35	1.2122837E-7	45.0	39
CGTTTTT	27740	0.0	44.12401	1
CGTTATT	2100	0.0	43.071426	1
TCGTTGG	85	0.0	42.35294	2
CGGTCTA	315	0.0	42.142857	31
TACGGGA	940	0.0	40.45213	4
CGACGGT	335	0.0	40.298508	28
CGCCGCA	90	0.0	40.0	18
TCACGAC	355	0.0	39.929577	25
TAGTTCG	40	3.459245E-7	39.375	1
ACGGTCT	340	0.0	39.044117	30
GTTTGCG	35	6.24968E-6	38.571426	1
TTTAGCG	70	0.0	38.571426	1
CACGACG	350	0.0	38.571426	26
TATAGCG	70	0.0	38.571426	1
AGATGCG	35	6.24968E-6	38.571426	1
CTCACGA	370	0.0	38.31081	24
TAAGCGG	130	0.0	38.07692	2