##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935178.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 297869 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.614515105633686 31.0 31.0 34.0 30.0 34.0 2 31.71613024517489 31.0 31.0 34.0 30.0 34.0 3 31.730072615814336 31.0 31.0 34.0 30.0 34.0 4 35.54671013096361 37.0 35.0 37.0 33.0 37.0 5 33.101594996458175 37.0 35.0 37.0 28.0 37.0 6 34.088176345977594 37.0 35.0 37.0 28.0 37.0 7 35.31347001534232 37.0 35.0 37.0 32.0 37.0 8 35.28830794745341 37.0 35.0 37.0 33.0 37.0 9 37.35350439287069 39.0 37.0 39.0 34.0 39.0 10 36.89922079840467 39.0 37.0 39.0 33.0 39.0 11 36.76787446830654 39.0 37.0 39.0 32.0 39.0 12 37.08942185994514 39.0 37.0 39.0 33.0 39.0 13 37.03234979135123 39.0 37.0 39.0 33.0 39.0 14 37.99358442805394 40.0 37.0 41.0 33.0 41.0 15 38.12790522007997 40.0 37.0 41.0 33.0 41.0 16 38.09035515612568 40.0 37.0 41.0 33.0 41.0 17 38.040148521665564 39.0 37.0 41.0 33.0 41.0 18 37.93770751572 39.0 37.0 40.0 33.0 41.0 19 37.691287109434015 39.0 36.0 40.0 33.0 41.0 20 37.52619775807486 39.0 35.0 40.0 33.0 41.0 21 37.43595338890586 39.0 35.0 40.0 33.0 41.0 22 37.34730032329648 39.0 35.0 40.0 33.0 41.0 23 37.09220831976473 39.0 35.0 40.0 32.0 41.0 24 36.81593586442362 39.0 35.0 40.0 32.0 41.0 25 36.59791049085336 38.0 35.0 40.0 31.0 41.0 26 36.81144395690723 38.0 35.0 40.0 32.0 41.0 27 36.712454132521344 38.0 35.0 40.0 32.0 41.0 28 36.73665604678567 38.0 35.0 40.0 32.0 41.0 29 36.854107006771436 39.0 35.0 40.0 33.0 41.0 30 36.64404150817977 38.0 35.0 40.0 32.0 41.0 31 36.432277276252314 38.0 35.0 40.0 31.0 41.0 32 36.215000553934786 38.0 35.0 40.0 31.0 41.0 33 36.01196163414118 38.0 35.0 40.0 30.0 41.0 34 35.91006784861802 38.0 35.0 40.0 30.0 41.0 35 35.7437866981794 38.0 35.0 40.0 30.0 41.0 36 35.42963517519446 38.0 35.0 40.0 27.0 41.0 37 35.382550718604485 38.0 35.0 40.0 27.0 41.0 38 35.36265270974825 38.0 35.0 40.0 27.0 41.0 39 35.32064431008262 38.0 35.0 40.0 27.0 41.0 40 35.30147145221557 38.0 35.0 40.0 26.0 41.0 41 35.106694553646065 38.0 35.0 40.0 25.0 41.0 42 35.01114583927834 38.0 35.0 40.0 24.0 41.0 43 34.895927404328745 38.0 35.0 40.0 24.0 41.0 44 34.897730210260214 38.0 35.0 40.0 24.0 41.0 45 34.99766675954866 38.0 35.0 40.0 24.0 41.0 46 34.91362981713438 38.0 35.0 40.0 23.0 41.0 47 34.77000627792754 38.0 34.0 40.0 23.0 41.0 48 34.71089640076678 38.0 34.0 40.0 23.0 41.0 49 34.71255820511701 38.0 34.0 40.0 23.0 41.0 50 34.66433902151617 38.0 34.0 40.0 23.0 41.0 51 33.81078930670866 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 8.0 10 10.0 11 13.0 12 9.0 13 16.0 14 12.0 15 26.0 16 31.0 17 64.0 18 134.0 19 257.0 20 460.0 21 694.0 22 1025.0 23 1547.0 24 2264.0 25 3373.0 26 4371.0 27 4650.0 28 4790.0 29 4872.0 30 5482.0 31 6837.0 32 9066.0 33 12252.0 34 18520.0 35 30901.0 36 36365.0 37 43932.0 38 63124.0 39 42748.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.36611396284944 24.18244261739221 23.157159691005106 18.294283728753243 2 35.958424676619586 25.396399088189774 24.047483961070135 14.597692274120503 3 26.0644780087891 24.88476477914788 36.15884835279938 12.891908859263637 4 24.716570035821118 25.658259167620667 34.432921854909374 15.192248941648845 5 17.918615230185083 33.17028626678171 32.46024258986333 16.450855913169885 6 19.870815694147428 33.39286733429797 32.656973367487055 14.07934360406756 7 61.32930919296737 10.960187196384988 21.585663496369207 6.124840114278425 8 59.39825896618983 9.592807576484965 21.56484897723496 9.444084480090241 9 53.84212522954722 12.859008490309499 24.774984976617237 8.523881303526046 10 23.580835870802268 32.89734749168258 30.424112613262878 13.097704024252272 11 16.3420832647909 27.34792811605102 35.98763214701765 20.322356472140438 12 16.64960099909692 23.89473224806878 41.95099187898036 17.504674873853943 13 18.576958327318387 26.834615216756358 40.945180599525294 13.643245856399961 14 13.63485290513615 29.863799186890883 37.674951069094135 18.826396838878836 15 10.774535114429499 30.24953922697562 40.6826490839933 18.293276574601585 16 11.059559739348506 30.96059005804565 36.604681923933 21.37516827867284 17 10.664755311898855 31.50344614578892 34.431914700757716 23.39988384155451 18 10.493203388066567 29.620403600240376 41.33024920350892 18.55614380818413 19 10.949444218767312 30.64467937247582 38.16946375755785 20.236412651199018 20 12.118750188841403 33.20587238014026 38.032826510983014 16.64255092003532 21 13.070175144106974 32.2410187028526 38.629733204865225 16.059072948175203 22 10.551954046913242 32.10606004653052 33.58859095777002 23.75339494878621 23 10.565382768935336 30.62890062409986 34.64710997116182 24.158606635802986 24 14.787037254632072 29.676804232733183 33.55099053610815 21.985167976526593 25 10.449224323444199 33.68527775632912 31.172092429893677 24.693405490333 26 10.885993507212904 35.5172911581937 33.35325260433278 20.243462730260617 27 16.17523139366634 32.526379045822154 33.39152446209575 17.906865098415746 28 10.203814428490377 33.35190973213057 33.61511268376367 22.829163155615387 29 13.710389466510446 31.152285064911084 34.985849484169215 20.151475984409252 30 22.354793550184812 32.02313768804407 28.837509106352123 16.78455965541899 31 18.51216474356177 37.63970067378612 25.785832026830587 18.062302555821518 32 19.302109316511622 34.355370985231765 28.287602939547252 18.054916758709368 33 22.04828297003045 29.27159254571641 29.59086041179176 19.089264072461383 34 19.12887880242657 30.42948410207172 30.066237171373995 20.37539992412772 35 21.610506632110088 30.43250556452669 27.430179038436357 20.526808764926862 36 25.192618231504454 32.03186635735843 28.415847234858276 14.359668176278834 37 20.885691360967403 32.556593670371875 32.33300544870396 14.224709519956761 38 20.425757631710585 31.768663405725334 30.478163219401814 17.327415743162263 39 25.37659172320718 26.304180696883527 32.315548110075234 16.003679469834054 40 29.613353521178777 25.740845808056562 28.693821780715684 15.951978890048983 41 25.556200880252728 29.084933309609255 25.844918403727814 19.5139474064102 42 22.58408897871212 27.345913807747703 32.016759045083575 18.053238168456602 43 22.85467772745737 26.684213530108874 33.46101809856011 17.00009064387365 44 20.40057877791915 26.33976681024209 30.55504265297832 22.704611758860437 45 24.548375292494352 24.194528467212095 28.3359463388268 22.92114990146675 46 27.609116759380804 25.067731116698948 31.379566185135076 15.943585938785171 47 20.11756846130346 27.24083405792479 36.265942410925604 16.37565506984614 48 19.696242307860167 24.50238191956867 35.189294622803985 20.61208114976718 49 22.720390507236402 21.877402482299267 37.63399346692673 17.768213543537595 50 22.55622438051627 20.293820437843483 33.547969073653185 23.60198610798707 51 20.354249686942918 19.85067261111428 29.700640214322405 30.094437487620397 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7955.0 1 6908.5 2 5862.0 3 9093.0 4 12324.0 5 7747.5 6 3171.0 7 3223.0 8 3275.0 9 3737.5 10 4200.0 11 4681.5 12 5163.0 13 5074.0 14 4985.0 15 4707.5 16 4430.0 17 3874.0 18 3318.0 19 3048.5 20 2779.0 21 2578.0 22 2377.0 23 2404.5 24 2432.0 25 2412.0 26 2279.5 27 2167.0 28 2376.0 29 2585.0 30 2774.0 31 2963.0 32 3125.0 33 3287.0 34 3692.5 35 4098.0 36 4433.0 37 4768.0 38 5217.5 39 5667.0 40 6951.0 41 8235.0 42 11106.5 43 13978.0 44 16752.0 45 19526.0 46 25289.0 47 31052.0 48 39147.0 49 47242.0 50 45768.0 51 44294.0 52 32705.0 53 21116.0 54 15189.0 55 9262.0 56 6835.5 57 4409.0 58 3498.0 59 2587.0 60 2260.0 61 1933.0 62 1713.0 63 1493.0 64 1216.0 65 939.0 66 776.0 67 613.0 68 535.0 69 457.0 70 354.0 71 251.0 72 188.5 73 126.0 74 116.5 75 62.5 76 18.0 77 18.0 78 18.0 79 13.5 80 9.0 81 6.5 82 4.0 83 2.5 84 1.0 85 0.5 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 297869.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.84010328320577 #Duplication Level Percentage of deduplicated Percentage of total 1 68.81884777442319 23.976557642921193 2 12.318576004107 8.583609205702162 3 5.423399223003782 5.668553672265291 4 3.057653450767684 4.261158481159865 5 2.0110781333446215 3.5033084938161636 6 1.470096655634221 3.073099159115498 7 1.0738758879904302 2.6189762795651634 8 0.8752684021832572 2.4395553226072937 9 0.6327481657799361 1.9840510303228778 >10 4.092902541660553 23.45394483738364 >50 0.1327373903850088 3.239990778286414 >100 0.07984203932932862 5.600962809254942 >500 0.004990127458083039 1.2013488022085812 >1k 0.005988152949699646 5.272721631459023 >5k 0.0019960509832332154 5.122161853931869 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7426 2.493042243402301 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7305 2.4524203592854574 No Hit CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 3726 1.250885456358332 No Hit GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 2762 0.9272532556257953 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2486 0.8345950736733263 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC 2358 0.7916231632026159 No Hit CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT 2328 0.7815516216860432 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 1504 0.5049199480308458 No Hit ACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 833 0.27965313611016923 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG 781 0.26219579748144317 No Hit CGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG 668 0.22425965776901924 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 655 0.21989532311183774 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC 518 0.17390195018615565 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 500 0.16785902527621202 No Hit GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 450 0.15107312274859083 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 439 0.14738022419251415 No Hit GCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG 436 0.1463730700408569 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 435 0.14603735199030446 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC 429 0.14402304368698993 No Hit ACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG 418 0.14033014513091324 No Hit AGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG 412 0.1383158368275987 No Hit AGCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT 381 0.12790857726047358 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 379 0.1272371411593687 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGT 375 0.12589426895715902 No Hit GGCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT 331 0.11112267473285237 No Hit GGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG 313 0.10507974982290874 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8627953899197298 0.0 2 0.0 0.0 0.0 4.1511536950807235 0.0 3 0.0 0.0 0.0 5.4621326824879395 0.0 4 0.0 0.0 0.0 7.0077785872313 0.0 5 0.0 0.0 0.0 10.75271344114359 0.0 6 0.0 0.0 0.0 12.635755986692136 0.0 7 0.0 0.0 0.0 14.670543091090378 0.0 8 0.0 0.0 0.0 17.539925269161948 0.0 9 0.0 0.0 0.0 18.61623733923302 0.0 10 0.0 0.0 0.0 21.792801533560056 0.0 11 0.0 0.0 0.0 27.307641949984724 0.0 12 0.0 0.0 0.0 31.087155763103915 0.0 13 0.0 0.0 0.0 32.4703141313799 0.0 14 0.0 0.0 0.0 32.99739147074721 0.0 15 0.0 0.0 0.0 34.03744599135862 0.0 16 0.0 0.0 0.0 36.31126434775018 0.0 17 0.0 0.0 0.0 39.05139507635907 0.0 18 0.0 0.0 0.0 41.727739375362994 0.0 19 0.0 0.0 0.0 43.48656624220715 0.0 20 0.0 0.0 0.0 44.93921824694748 0.0 21 0.0 0.0 0.0 46.736652689605165 0.0 22 0.0 0.0 0.0 48.50655825211754 0.0 23 0.0 0.0 0.0 49.97935333989103 0.0 24 0.0 0.0 0.0 50.99926477746929 0.0 25 0.0 0.0 0.0 51.793237967025775 0.0 26 0.0 0.0 0.0 52.499588745388074 0.0 27 0.0 0.0 0.0 53.07433804793382 0.0 28 0.0 0.0 0.0 53.62323706058704 0.0 29 0.0 0.0 0.0 54.16105737757202 0.0 30 0.0 0.0 0.0 54.70659920971971 0.0 31 0.0 0.0 0.0 55.17794735269531 0.0 32 0.0 0.0 0.0 55.54253715559525 0.0 33 0.0 0.0 0.0 55.87691233394546 0.0 34 0.0 0.0 0.0 56.16965847402717 0.0 35 0.0 0.0 0.0 56.487247749849764 0.0 36 0.0 0.0 0.0 56.81423713108783 0.0 37 0.0 0.0 0.0 57.12477632784882 0.0 38 0.0 0.0 0.0 57.39805082099849 0.0 39 0.0 0.0 0.0 57.66360379898546 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACGA 25 3.883824E-5 45.000004 24 GATAAAT 25 3.883824E-5 45.000004 9 GACCGTG 25 3.883824E-5 45.000004 27 CCGTGAT 25 3.883824E-5 45.000004 29 CACGACG 25 3.883824E-5 45.000004 26 TGTGCGG 50 2.1827873E-11 45.000004 2 CTACGAA 25 3.883824E-5 45.000004 11 GTGTACG 25 3.883824E-5 45.000004 1 TTAGTGG 25 3.883824E-5 45.000004 2 CGGTCTA 25 3.883824E-5 45.000004 31 GCTACGA 25 3.883824E-5 45.000004 10 CAACTCA 25 3.883824E-5 45.000004 20 AGGTGTA 25 3.883824E-5 45.000004 15 CCGCAGG 25 3.883824E-5 45.000004 2 GTCGGAG 25 3.883824E-5 45.000004 1 GCATATC 55 1.8189894E-12 45.000004 9 CTTAAGG 40 6.7866495E-9 45.0 2 ATGGGAC 105 0.0 45.0 5 CGGAAGG 35 1.2078817E-7 45.0 2 GCCTTGG 20 7.0248626E-4 45.0 2 >>END_MODULE