##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935177.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 231638 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.598053859902087 31.0 31.0 34.0 30.0 34.0 2 31.710038940070284 31.0 31.0 34.0 30.0 34.0 3 31.715115827282226 31.0 31.0 34.0 30.0 34.0 4 35.515101149206956 37.0 35.0 37.0 33.0 37.0 5 32.90824476122225 37.0 35.0 37.0 28.0 37.0 6 33.95887548675088 37.0 35.0 37.0 26.0 37.0 7 35.322982412212156 37.0 35.0 37.0 32.0 37.0 8 35.249402084286686 37.0 35.0 37.0 33.0 37.0 9 37.34743867586493 39.0 37.0 39.0 34.0 39.0 10 36.76209430231655 39.0 37.0 39.0 32.0 39.0 11 36.6808943264922 39.0 37.0 39.0 32.0 39.0 12 37.03720460373514 39.0 37.0 39.0 33.0 39.0 13 36.97559554131878 39.0 37.0 39.0 33.0 39.0 14 37.92808606532607 40.0 37.0 41.0 33.0 41.0 15 38.05561695404035 40.0 37.0 41.0 33.0 41.0 16 38.05707181032473 40.0 37.0 41.0 33.0 41.0 17 37.999771194708984 39.0 37.0 41.0 33.0 41.0 18 37.88551964703546 39.0 37.0 40.0 33.0 41.0 19 37.6541025220387 39.0 37.0 40.0 33.0 41.0 20 37.42210690819296 39.0 35.0 40.0 33.0 41.0 21 37.33182811110439 39.0 35.0 40.0 33.0 41.0 22 37.32011587045304 39.0 35.0 40.0 33.0 41.0 23 37.04469473920514 39.0 35.0 40.0 32.0 41.0 24 36.761921619078045 39.0 35.0 40.0 32.0 41.0 25 36.56604270456488 38.0 35.0 40.0 31.0 41.0 26 36.91246254932265 39.0 35.0 40.0 32.0 41.0 27 36.81157668430914 39.0 35.0 40.0 32.0 41.0 28 36.92314732470493 39.0 35.0 40.0 32.0 41.0 29 37.00569422978958 39.0 35.0 40.0 33.0 41.0 30 36.65216415268652 39.0 35.0 40.0 31.0 41.0 31 36.50488261856863 39.0 35.0 40.0 31.0 41.0 32 36.2344088621038 39.0 35.0 40.0 30.0 41.0 33 35.95447206416909 39.0 35.0 40.0 30.0 41.0 34 35.80814460494392 39.0 35.0 40.0 28.0 41.0 35 35.629801673300584 39.0 35.0 40.0 26.0 41.0 36 35.416641483694384 39.0 35.0 40.0 25.0 41.0 37 35.41753511945363 39.0 35.0 40.0 25.0 41.0 38 35.29411409181568 39.0 35.0 40.0 24.0 41.0 39 35.04962052858339 38.0 35.0 40.0 23.0 41.0 40 34.919905196902064 38.0 35.0 40.0 22.0 41.0 41 34.83052866973467 38.0 35.0 40.0 22.0 41.0 42 34.99712482407895 39.0 35.0 40.0 22.0 41.0 43 34.8909073640767 38.0 35.0 40.0 21.0 41.0 44 34.76298793807579 38.0 35.0 40.0 21.0 41.0 45 34.7102677453613 38.0 35.0 40.0 20.0 41.0 46 34.55164955663579 38.0 34.0 40.0 20.0 41.0 47 34.46925374938482 38.0 34.0 40.0 20.0 41.0 48 34.45832290038767 38.0 34.0 40.0 20.0 41.0 49 34.44292387259431 38.0 34.0 40.0 20.0 41.0 50 34.32353499857536 38.0 34.0 40.0 20.0 41.0 51 33.3783360243138 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 5.0 11 6.0 12 3.0 13 7.0 14 10.0 15 20.0 16 33.0 17 74.0 18 127.0 19 202.0 20 357.0 21 650.0 22 1018.0 23 1591.0 24 2140.0 25 3019.0 26 3947.0 27 4423.0 28 4319.0 29 4308.0 30 4667.0 31 5491.0 32 6849.0 33 8967.0 34 13156.0 35 20276.0 36 25248.0 37 33048.0 38 48929.0 39 38738.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.955404553657 22.919814538201848 22.93621944585949 19.188561462281665 2 36.70511746777299 25.25967241989656 23.73272088344745 14.302489228882997 3 25.57266078968045 26.003073761645325 35.333149137878934 13.091116310795293 4 23.12487588392233 24.982084114005474 37.08372546818743 14.809314533884768 5 18.74519724742918 33.287716177829196 32.73426639843204 15.232820176309586 6 20.326975712102506 34.21675200096703 33.29850888023554 12.15776340669493 7 65.0091953824502 8.01897788791131 21.978259180272666 4.993567549365821 8 63.13558224470942 8.760220689178805 21.14506255450315 6.959134511608631 9 57.600221034545285 10.711541284245245 23.476286274272788 8.211951406936684 10 22.969029261174764 37.57544098982032 28.30623645515848 11.149293293846432 11 18.699436189226294 24.8719985494608 37.75028276880305 18.678282492509865 12 19.24641034717965 22.038698313748174 40.9147031143422 17.800188224729965 13 19.255044509104724 23.57169376354484 42.993809305899724 14.179452421450712 14 14.560650670442673 27.792503820616655 38.915462920591615 18.731382588349064 15 11.724760186152531 27.024063409285176 43.69403983802312 17.55713656653917 16 12.907640369887496 28.269972975073177 38.72680648252877 20.095580172510555 17 12.973691708614304 27.819269722584377 37.95189044975349 21.255148119047824 18 13.072552862656387 26.200364361633238 42.399347257358464 18.32773551835191 19 13.209836037265044 27.98461392344952 39.60446904221242 19.20108099707302 20 13.888481164575762 29.822395289201253 39.91918424438132 16.369939301841665 21 14.564104335212702 29.091945190340102 40.325421562955995 16.018528911491206 22 12.706896105129555 26.209861939750816 38.07579067337829 23.007451281741336 23 12.168987817197523 27.046080522194117 38.84897987376855 21.935951786839812 24 15.34247403275801 25.294640775693107 37.50464086203473 21.858244329514157 25 12.349441801431544 29.79088059817474 35.077577944896774 22.78209965549694 26 12.147834120481095 28.57734913960576 36.64338321000872 22.63143352990442 27 14.289969694091642 27.05039760315665 37.02371804280817 21.635914659943534 28 10.984812509173796 25.338243293414724 38.41727177751492 25.25967241989656 29 14.662965489254788 23.72365501342612 35.88141842012105 25.73196107719804 30 15.742667437985133 28.158592286239738 32.75067130608967 23.348068969685457 31 14.031808252531969 30.741501826125244 30.207910619155754 25.018779302187035 32 15.885131109748832 29.43860679163177 30.635733342543105 24.04052875607629 33 15.11712240651361 30.061993282622023 29.421770175877874 25.39911413498649 34 13.901432407463368 28.16506790768354 30.784240927654356 27.14925875719873 35 14.147506022327944 26.597535810186585 30.649979709719478 28.604978457765995 36 13.926903185142333 30.78337751146185 28.396463447275487 26.893255856120323 37 15.347654529913054 28.628722403059946 31.484471459777758 24.539151607249245 38 17.109455270724148 30.033068840173026 29.197713673922244 23.65976221518058 39 19.097471053972146 31.000958391973683 29.79562938723353 20.105941166820642 40 17.0503112615374 29.271967466477868 32.86507395159689 20.812647320387846 41 14.349113703278391 30.525647777998426 30.101278719381103 25.023959799342077 42 16.210639014324073 26.27159619751509 33.01012787193811 24.507636916222726 43 18.944214679802105 25.327018882912128 30.65516020687452 25.073606230411244 44 18.1127448864176 24.41784163220197 29.223616159697457 28.245797321682968 45 19.404415510408484 23.63429143750162 28.771186074823646 28.19010697726625 46 20.541966344036815 25.402567799756515 31.57642528427978 22.479040571926888 47 14.057710738307186 27.081480586086908 35.72902546214352 23.131783213462384 48 15.679638055932102 25.416814166932888 33.85023182724769 25.053315949887324 49 18.557404225558845 23.347637261589206 35.849040312902034 22.24591819994992 50 18.184408430395706 22.11424723059256 33.778999991365836 25.922344347645897 51 16.12947789222839 22.15439608354415 30.635733342543105 31.080392681684355 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2658.0 1 3016.5 2 3375.0 3 6488.5 4 9602.0 5 6237.5 6 2873.0 7 2808.0 8 2743.0 9 2713.0 10 2683.0 11 2825.5 12 2968.0 13 3106.5 14 3245.0 15 2904.5 16 2564.0 17 2474.0 18 2384.0 19 2343.0 20 2302.0 21 2226.5 22 2151.0 23 2278.0 24 2405.0 25 2463.0 26 2825.0 27 3129.0 28 3528.0 29 3927.0 30 3754.5 31 3582.0 32 3807.0 33 4032.0 34 4208.0 35 4384.0 36 4675.0 37 4966.0 38 5339.5 39 5713.0 40 6652.5 41 7592.0 42 9618.0 43 11644.0 44 13693.5 45 15743.0 46 20974.5 47 26206.0 48 27843.0 49 29480.0 50 28462.5 51 27445.0 52 21222.5 53 15000.0 54 11568.5 55 8137.0 56 6515.5 57 4894.0 58 4187.5 59 3481.0 60 3134.5 61 2788.0 62 2354.0 63 1920.0 64 1596.5 65 1273.0 66 1014.0 67 755.0 68 591.0 69 427.0 70 339.0 71 251.0 72 211.0 73 171.0 74 125.5 75 91.5 76 103.0 77 62.5 78 22.0 79 15.0 80 8.0 81 8.5 82 9.0 83 5.5 84 2.0 85 1.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 231638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.219067661919624 #Duplication Level Percentage of deduplicated Percentage of total 1 73.195427513019 33.09828989254339 2 11.44228727908798 10.348191253604032 3 4.744666810700951 6.436482286390523 4 2.7830547681448357 5.033885674702774 5 1.875051486413188 4.239404001685046 6 1.3308834873576123 3.6108786278973257 7 1.0323561237375163 3.2677526987338674 8 0.788743855033053 2.8533009398930353 9 0.5880634405885312 2.3932512458526642 >10 2.0936655869288954 14.550479935225649 >50 0.07188551370767907 2.1887345782279897 >100 0.040934806416872804 3.4989053179180942 >500 0.00798727930085323 2.689868114084646 >1k 0.003993639650426615 3.188292820017752 >5k 9.984099126066537E-4 2.602282613223212 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5764 2.4883654668059645 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2146 0.9264455745603053 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCC 1959 0.8457161605608752 No Hit GCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGC 1489 0.6428133553216657 RNA PCR Primer, Index 40 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGC 1468 0.6337474853003393 RNA PCR Primer, Index 46 (96% over 26bp) GAATGATACCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCG 945 0.4079641509596871 No Hit GAATCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTC 930 0.40148852951588254 RNA PCR Primer, Index 46 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGCT 844 0.36436163323806975 RNA PCR Primer, Index 46 (96% over 27bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGC 776 0.33500548269282243 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 730 0.31514691026515507 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCG 628 0.27111268444728415 No Hit TCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGC 569 0.24564190676831954 RNA PCR Primer, Index 40 (95% over 23bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 536 0.2313955395919495 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGC 460 0.1985857242766731 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 416 0.17959056804151305 No Hit ACTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGC 405 0.17484177898272305 TruSeq Adapter, Index 8 (95% over 23bp) GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 362 0.15627833084381665 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 361 0.155846622747563 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGT 293 0.12649047220231568 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTC 285 0.1230368074322866 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 259 0.11181239692969203 No Hit CGCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTG 249 0.10749531596715564 RNA PCR Primer, Index 46 (96% over 25bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCGAATAT 240 0.1036099431008729 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCT 239 0.10317823500461927 RNA PCR Primer, Index 46 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.40019340522712166 0.0 2 0.0 0.0 0.0 2.261718716272805 0.0 3 0.0 0.0 0.0 2.9550419188561463 0.0 4 0.0 0.0 0.0 3.984234020324817 0.0 5 0.0 0.0 0.0 6.874951432839172 0.0 6 0.0 0.0 0.0 8.236558768423142 0.0 7 0.0 0.0 0.0 9.797615244476296 0.0 8 0.0 0.0 0.0 12.248853815004447 0.0 9 0.0 0.0 0.0 13.06694065740509 0.0 10 0.0 0.0 0.0 15.92873362747045 0.0 11 0.0 0.0 0.0 20.04981911430767 0.0 12 0.0 0.0 0.0 23.4482252480163 0.0 13 0.0 0.0 0.0 24.50116129477892 0.0 14 0.0 0.0 0.0 24.894447370465986 0.0 15 0.0 0.0 0.0 25.71382933715539 0.0 16 0.0 0.0 0.0 27.431164144052357 0.0 17 0.0 0.0 0.0 29.578048506721696 0.0 18 0.0 0.0 0.0 31.7922793324066 0.0 19 0.0 0.0 0.0 33.273038102556576 0.0 20 0.0 0.0 0.0 34.749479791744015 0.0 21 0.0 0.0 0.0 36.49228537631995 0.0 22 0.0 0.0 0.0 38.20962018321691 0.0 23 0.0 0.0 0.0 39.756862000189955 0.0 24 0.0 0.0 0.0 40.805480965990036 0.0 25 0.0 0.0 0.0 41.661558120860995 0.0 26 0.0 0.0 0.0 42.34797399390428 0.0 27 0.0 0.0 0.0 42.97395073347206 0.0 28 0.0 0.0 0.0 43.60899334306116 0.0 29 0.0 0.0 0.0 44.2259042126076 0.0 30 0.0 0.0 0.0 44.88814443226068 0.0 31 0.0 0.0 0.0 45.40230877489876 0.0 32 0.0 0.0 0.0 45.86898522694894 0.0 33 0.0 0.0 0.0 46.279107918389904 0.0 34 0.0 0.0 0.0 46.75010145140262 0.0 35 0.0 0.0 0.0 47.16108755903608 0.0 36 0.0 0.0 0.0 47.573800499054556 0.0 37 0.0 0.0 0.0 47.97269877999292 0.0 38 0.0 0.0 0.0 48.34871653182984 0.0 39 0.0 0.0 0.0 48.740275775131884 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCACCG 30 2.1579726E-6 45.000004 1 CGACGGT 30 2.1579726E-6 45.000004 28 CACGACG 30 2.1579726E-6 45.000004 26 CAGATTA 30 2.1579726E-6 45.000004 20 TGATTGT 30 2.1579726E-6 45.000004 43 TTTGCGG 35 1.2063174E-7 45.000004 2 CGGTCTA 30 2.1579726E-6 45.000004 31 CGCCCAA 30 2.1579726E-6 45.000004 37 AAGCTGC 30 2.1579726E-6 45.000004 42 ATTAGTT 25 3.8811326E-5 45.0 17 GTTCTAT 25 3.8811326E-5 45.0 8 TGCTTAG 20 7.0216117E-4 45.0 1 ATTACGG 20 7.0216117E-4 45.0 2 ACATTGC 20 7.0216117E-4 45.0 32 ATAGCGG 20 7.0216117E-4 45.0 2 ACTTCCC 20 7.0216117E-4 45.0 20 CGACAGG 25 3.8811326E-5 45.0 2 GCACCGG 40 6.7739165E-9 45.0 2 TATTGAG 20 7.0216117E-4 45.0 1 TCGTCTA 20 7.0216117E-4 45.0 45 >>END_MODULE