SRR2935175.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935175.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417152
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11543	2.7670968855477143	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3289	0.7884416231972998	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	2944	0.7057379564283522	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	2487	0.5961855630561521	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	2394	0.5738915311445228	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	1634	0.391703743479595	No Hit
TCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1362	0.3264996931574103	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1259	0.3018084535133476	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1219	0.2922196225836146	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	930	0.22294031911629336	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	891	0.21359120895980363	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	854	0.20472154034980056	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	828	0.19848880024547405	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	823	0.19729019637925743	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	791	0.189619131635471	No Hit
ACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	622	0.14910632095734888	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	567	0.13592167842896594	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	552	0.13232586683031605	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	439	0.1052374194538202	No Hit
AGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	438	0.10499769868057686	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	437	0.10475797790733354	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1621636E-6	45.000004	1
ATGTACG	35	1.209446E-7	45.000004	1
AAGTTCG	30	2.1621636E-6	45.000004	1
GACGGGC	30	2.1621636E-6	45.000004	4
CGGTCTA	35	1.209446E-7	45.000004	31
TAGTACG	30	2.1621636E-6	45.000004	1
CTCACGA	40	6.7975634E-9	45.0	24
CCTTAAT	25	3.8865182E-5	45.0	42
GGCGTAG	20	7.0281135E-4	45.0	1
GGCCGAT	20	7.0281135E-4	45.0	8
GGGCGCG	20	7.0281135E-4	45.0	7
TATTCGT	25	3.8865182E-5	45.0	14
CGGGCAC	25	3.8865182E-5	45.0	6
TACCTTG	20	7.0281135E-4	45.0	11
ACTAATC	25	3.8865182E-5	45.0	10
GACGACG	20	7.0281135E-4	45.0	1
CTGGCGG	20	7.0281135E-4	45.0	2
TGCACGG	55	1.8189894E-12	45.0	2
GACTAAT	55	1.8189894E-12	45.0	9
TGATCTA	25	3.8865182E-5	45.0	41

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content