SRR2935172.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935172.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1609892
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	103565	6.433040228785533	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7224	0.44872575303188045	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC	6400	0.39754219537708124	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5441	0.3379729820385467	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	2356	0.146345220673188	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCG	2336	0.14510290131263462	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2217	0.13771110111734203	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2106	0.13081622866627077	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1870	0.1161568602117409	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1823	0.11323740971444048	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	1682	0.10447905822253914	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGT	1612	0.10013094046060234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGAC	20	7.0341286E-4	45.000004	25
CCGAATA	20	7.0341286E-4	45.000004	42
TATCGCG	20	7.0341286E-4	45.000004	1
TAGTACG	45	3.8562575E-10	45.0	1
CGTTTTT	35050	0.0	44.22325	1
CGTTATT	2640	0.0	43.721592	1
CGACGGT	240	0.0	43.124996	28
CGACAGG	70	0.0	41.785713	2
CGGTCTA	255	0.0	40.588234	31
ACGGGTA	145	0.0	40.344826	5
CGAATAT	110	0.0	38.863636	14
ACAACGA	470	0.0	38.776596	13
CACGACG	280	0.0	38.571426	26
GTTTTTT	41980	0.0	37.98952	2
CGTAAGG	160	0.0	37.968754	2
AGCGACT	505	0.0	37.87129	19
CTCACGA	280	0.0	37.767857	24
CGCGACG	30	1.14012524E-4	37.499996	1
CCGTTTA	30	1.14012524E-4	37.499996	26
TCGGTAG	30	1.14012524E-4	37.499996	1