SRR2935162.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935162.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1508220
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80696	5.3504130697113155	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6032	0.39994165307448515	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC	4818	0.31944941719377806	No Hit
CCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	3490	0.23139860232592063	Illumina PCR Primer Index 10 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	3322	0.22025964381854105	Illumina PCR Primer Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT	2576	0.1707973637798199	Illumina PCR Primer Index 10 (95% over 24bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	2074	0.13751309490657862	No Hit
CGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTG	1996	0.13234143559958098	Illumina PCR Primer Index 10 (95% over 22bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT	1883	0.12484915993687924	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCT	1804	0.11961119730543289	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	1728	0.11457214464733262	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTC	1725	0.11437323467398655	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1654	0.10966569863812971	No Hit
TCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1647	0.1092015753669889	Illumina PCR Primer Index 10 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1636	0.10847223879805333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	25	3.8913866E-5	45.000004	1
CGCGTCA	30	2.1659544E-6	45.000004	39
AGTCGAA	25	3.8913866E-5	45.000004	25
CGGCCTA	20	7.033989E-4	45.0	45
CGTTCGC	20	7.033989E-4	45.0	44
TACCGGT	20	7.033989E-4	45.0	40
CGTTTTT	33195	0.0	44.254402	1
CGTTATT	2360	0.0	44.141945	1
GCGTAAG	100	0.0	42.750004	1
CGGTCTA	245	0.0	40.408165	31
TAGCCGT	45	1.9290383E-8	40.0	44
ACGATAG	85	0.0	39.705883	1
GACGGTC	250	0.0	39.6	29
ATCGGTT	40	3.4591721E-7	39.375	10
GTTATTT	2710	0.0	39.271217	2
TCACGAC	260	0.0	38.942307	25
CGACGGT	255	0.0	38.82353	28
TCGTTAG	35	6.2495874E-6	38.571426	1
GCGCGAC	105	0.0	38.571426	9
CTACGGG	280	0.0	38.571426	3