##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935162.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1508220 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91210433491135 33.0 31.0 34.0 30.0 34.0 2 32.05530360292265 33.0 31.0 34.0 30.0 34.0 3 31.98694288631632 33.0 31.0 34.0 30.0 34.0 4 35.73496572118126 37.0 35.0 37.0 35.0 37.0 5 33.177226134118364 37.0 35.0 37.0 28.0 37.0 6 34.232655050324226 37.0 35.0 37.0 28.0 37.0 7 35.54210658922438 37.0 35.0 37.0 32.0 37.0 8 35.54367930408031 37.0 35.0 37.0 33.0 37.0 9 37.655369243213855 39.0 37.0 39.0 35.0 39.0 10 37.11668125339804 39.0 37.0 39.0 33.0 39.0 11 36.99268541724682 39.0 37.0 39.0 33.0 39.0 12 37.27328837967936 39.0 37.0 39.0 34.0 39.0 13 37.25471814456777 39.0 37.0 39.0 34.0 39.0 14 38.320955165692006 40.0 38.0 41.0 33.0 41.0 15 38.44435294585671 40.0 38.0 41.0 34.0 41.0 16 38.420973730622855 40.0 38.0 41.0 33.0 41.0 17 38.3512385461007 40.0 38.0 41.0 33.0 41.0 18 38.03684542042938 39.0 37.0 40.0 34.0 41.0 19 37.587419607219104 38.0 37.0 40.0 34.0 41.0 20 37.14888013685006 38.0 35.0 40.0 33.0 41.0 21 37.0428684144223 38.0 35.0 40.0 33.0 41.0 22 37.01973054328944 38.0 35.0 40.0 33.0 41.0 23 36.793810584662715 38.0 35.0 40.0 33.0 41.0 24 36.49055774356526 38.0 35.0 40.0 32.0 41.0 25 36.28566853642042 38.0 35.0 40.0 31.0 41.0 26 36.541965363143305 38.0 35.0 40.0 33.0 41.0 27 36.442965217276 38.0 35.0 40.0 32.0 41.0 28 36.43028271737545 38.0 35.0 40.0 32.0 41.0 29 36.40636777128005 38.0 35.0 40.0 32.0 41.0 30 36.024235191152485 38.0 35.0 40.0 31.0 41.0 31 35.637048308602196 38.0 35.0 40.0 29.0 41.0 32 35.052325257588414 38.0 35.0 40.0 24.0 41.0 33 34.396474652239064 38.0 34.0 40.0 18.0 41.0 34 33.78525148850964 38.0 33.0 40.0 15.0 41.0 35 33.36928365888266 38.0 33.0 40.0 10.0 41.0 36 33.08890546472 38.0 33.0 40.0 10.0 41.0 37 32.98839890732121 38.0 33.0 40.0 10.0 41.0 38 32.90813939610932 38.0 33.0 40.0 10.0 41.0 39 32.77161422073703 38.0 33.0 40.0 10.0 41.0 40 32.633660871756106 38.0 32.0 40.0 9.0 41.0 41 32.47881012053944 38.0 31.0 40.0 8.0 41.0 42 32.47062829030248 38.0 32.0 40.0 8.0 41.0 43 32.36656654864675 38.0 31.0 40.0 8.0 41.0 44 32.25058148015542 37.0 31.0 40.0 8.0 41.0 45 32.21501239872167 37.0 31.0 40.0 8.0 41.0 46 32.09534020235775 37.0 31.0 40.0 8.0 41.0 47 31.9961935261434 37.0 31.0 40.0 8.0 41.0 48 31.914872498707084 37.0 30.0 40.0 8.0 41.0 49 31.86460861147578 37.0 30.0 40.0 8.0 41.0 50 31.758933709936215 37.0 30.0 40.0 7.0 41.0 51 30.906485128164327 35.0 27.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 2.0 8 12.0 9 18.0 10 33.0 11 41.0 12 40.0 13 79.0 14 121.0 15 206.0 16 319.0 17 611.0 18 1193.0 19 2166.0 20 3639.0 21 5831.0 22 9271.0 23 14711.0 24 24486.0 25 40059.0 26 54655.0 27 55937.0 28 48453.0 29 40256.0 30 36278.0 31 37261.0 32 42377.0 33 53705.0 34 77789.0 35 108945.0 36 137583.0 37 168800.0 38 264964.0 39 278276.0 40 102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.202901433477873 18.607563883253107 19.914932834732333 32.27460184853669 2 47.27758549813687 19.889870178090728 20.59527124690032 12.237273076872073 3 22.858203710334035 19.993701184177375 45.073530386813594 12.074564718674994 4 20.623251249817663 21.00907029478458 44.98090464255878 13.386773812838976 5 16.921801859145216 28.871583721207784 41.139157417352905 13.067457002294095 6 18.466603015475197 27.773003938417475 42.794287305565504 10.96610574054183 7 59.575990240150645 5.740674437416292 30.88780151436793 3.7955338080651364 8 60.13718157828434 5.267533914150455 30.468963413825566 4.12632109373964 9 55.19101987773667 7.950696847939956 31.908673800904374 4.949609473418997 10 23.30164034424686 29.202238400233387 37.342827969394385 10.153293286125367 11 18.710135126175224 22.181843497632972 44.457837715983075 14.650183660208723 12 18.06566681253398 19.023153120897483 47.287265783506385 15.62391428306215 13 17.9988330614897 19.560475262229648 48.653114267149355 13.787577409131293 14 14.35413931654533 22.349259391865907 47.493137605919564 15.8034636856692 15 13.264974605826735 23.006723157099096 48.76079086605402 14.967511371020143 16 15.384625585126837 23.269682141862592 45.80253543912692 15.54315683388365 17 15.435016111707842 23.360186179735052 44.72762594316479 16.477171765392317 18 14.999801090026654 22.954277227460185 46.71917889963002 15.326742782883136 19 14.576520666746232 24.409900412406678 45.46273090132739 15.550848019519698 20 14.778082773070242 24.90346235960271 45.80890055827399 14.509554309053055 21 15.01869753749453 23.62407341104083 47.32844014798902 14.02878890347562 22 14.30169338690642 21.823341422338917 45.928246542281634 17.946718648473034 23 13.307342430149447 22.891023855936137 46.51184840407898 17.289785309835434 24 14.291747888239117 22.930408030658658 45.59871901977165 17.179125061330573 25 13.880932489955047 24.66748882788983 43.90274628369866 17.54883239845646 26 13.235005503175929 24.60940711567278 44.4265425468433 17.72904483430799 27 13.895983344604899 23.59887814775033 45.00298364960019 17.502154858044584 28 12.289254883239845 24.1333492461312 44.62883398973624 18.948561880892708 29 13.549018047764916 22.81550436938908 44.48190582275796 19.15357176008805 30 14.498945777141268 23.837636419090053 43.617111561973715 18.046306241794962 31 13.53721605601305 26.74523610613836 41.6601689408707 18.057378896977895 32 14.560740475527442 25.776279322645234 41.167601543541394 18.495378658285926 33 14.976860139767409 24.938072694964923 40.3058572356818 19.77920992958587 34 14.253358263383326 26.66089827743963 39.3885507419342 19.697192717242842 35 15.5129888212595 25.791926907215128 37.21214411690602 21.482940154619353 36 16.05767063160547 27.123363965469228 35.783771598307936 21.035193804617364 37 15.645595470156874 29.044569094694406 36.32401108591585 18.98582434923287 38 16.448528729230482 27.66552624948615 37.081990691013246 18.80395433027012 39 17.16162098367612 25.939186590815666 37.36537109970694 19.533821325801277 40 18.495842781557066 25.78774979777486 36.84681279919375 18.86959462147432 41 17.638010369839943 26.36856691994537 34.39955709379268 21.593865616422008 42 17.539947752980332 25.615095940910475 35.35538581904497 21.48957048706422 43 17.265054169816075 24.97109175054037 36.44276034000345 21.321093739640105 44 16.959992574027662 25.1289599660527 35.83548819137792 22.075559268541724 45 17.360464653697736 23.988012358939677 36.251077429022295 22.400445558340294 46 17.693174735781252 24.791277134635532 36.506080014851946 21.009468114731273 47 15.599448356340586 25.79026932410391 38.02369680815796 20.586585511397544 48 16.145655143148876 25.14851944676506 37.283353887363916 21.42247152272215 49 17.18502605720651 23.578655633793478 38.20629616368964 21.030022145310365 50 16.383882987893013 23.218297065414863 37.84713105515111 22.55068889154102 51 16.145920356446673 23.174006444683137 36.072124756335285 24.60794844253491 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8192.0 1 9534.0 2 10876.0 3 66551.0 4 122226.0 5 78406.5 6 34587.0 7 33143.5 8 31700.0 9 32252.0 10 32804.0 11 32844.5 12 32885.0 13 31972.0 14 31059.0 15 29359.0 16 27659.0 17 25977.0 18 24295.0 19 22796.5 20 21298.0 21 20492.0 22 19686.0 23 20026.0 24 20366.0 25 20121.0 26 20202.0 27 20528.0 28 21481.0 29 22434.0 30 24098.5 31 25763.0 32 28175.5 33 30588.0 34 32913.0 35 35238.0 36 37431.5 37 39625.0 38 41735.0 39 43845.0 40 49103.5 41 54362.0 42 61015.0 43 67668.0 44 75543.5 45 83419.0 46 99051.0 47 114683.0 48 124834.5 49 134986.0 50 127945.5 51 120905.0 52 99490.0 53 78075.0 54 64922.5 55 51770.0 56 44616.5 57 37463.0 58 34188.5 59 30914.0 60 27657.0 61 24400.0 62 21757.0 63 19114.0 64 16243.5 65 13373.0 66 10640.0 67 7907.0 68 6257.0 69 4607.0 70 3982.0 71 3357.0 72 3047.5 73 2738.0 74 2027.5 75 995.0 76 673.0 77 513.5 78 354.0 79 347.5 80 341.0 81 250.0 82 159.0 83 101.0 84 43.0 85 32.5 86 22.0 87 25.0 88 28.0 89 18.0 90 8.0 91 5.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1508220.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.18985138910287 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06744959958725 30.202618967449997 2 9.482997918637667 7.43274558309164 3 3.8034208231905913 4.471664904931757 4 2.063622362056061 3.2349221476882595 5 1.2772804804639775 2.502821610579259 6 0.8707432156836917 2.047457833242806 7 0.7093215787950573 1.9458745082043483 8 0.5156464062874151 1.6166484825383007 9 0.43984019319695306 1.55135446257086 >10 3.5176737178069026 26.674949804991606 >50 0.18542018773796556 4.8557597639315695 >100 0.05994264780595061 3.991829993371718 >500 0.0022718761515324237 0.6079000939781933 >1k 0.0040194731911727495 2.9236186583755206 >5k 1.747597039640326E-4 0.4131200278139322 >10k+ 1.747597039640326E-4 5.5267131572402315 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 80696 5.3504130697113155 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6032 0.39994165307448515 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC 4818 0.31944941719377806 No Hit CCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 3490 0.23139860232592063 Illumina PCR Primer Index 10 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 3322 0.22025964381854105 Illumina PCR Primer Index 10 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT 2576 0.1707973637798199 Illumina PCR Primer Index 10 (95% over 24bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG 2074 0.13751309490657862 No Hit CGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTG 1996 0.13234143559958098 Illumina PCR Primer Index 10 (95% over 22bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT 1883 0.12484915993687924 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCT 1804 0.11961119730543289 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT 1728 0.11457214464733262 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTC 1725 0.11437323467398655 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1654 0.10966569863812971 No Hit TCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 1647 0.1092015753669889 Illumina PCR Primer Index 10 (95% over 23bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1636 0.10847223879805333 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.326066488973757E-4 0.0 0.0 0.18757210486533796 0.0 2 1.326066488973757E-4 0.0 0.0 0.8816353051942024 0.0 3 1.326066488973757E-4 0.0 0.0 1.3252708490803728 0.0 4 1.326066488973757E-4 0.0 0.0 1.8878545570274894 0.0 5 1.326066488973757E-4 0.0 0.0 3.3084695866650753 0.0 6 1.326066488973757E-4 0.0 0.0 4.373367280635451 0.0 7 1.326066488973757E-4 0.0 0.0 5.349683733142379 0.0 8 1.326066488973757E-4 0.0 0.0 6.676015435413932 0.0 9 1.326066488973757E-4 0.0 0.0 7.2660487196828045 0.0 10 1.326066488973757E-4 0.0 0.0 8.670750951452705 0.0 11 1.326066488973757E-4 0.0 0.0 10.712893344472292 0.0 12 1.326066488973757E-4 0.0 0.0 12.212608240177163 0.0 13 1.326066488973757E-4 0.0 0.0 12.820145602100489 0.0 14 1.326066488973757E-4 0.0 0.0 13.091922929015661 0.0 15 1.326066488973757E-4 0.0 0.0 13.527137950696847 0.0 16 1.326066488973757E-4 0.0 0.0 14.391733301507738 0.0 17 1.326066488973757E-4 0.0 0.0 15.503706355836682 0.0 18 1.326066488973757E-4 0.0 0.0 16.638487753775973 0.0 19 1.9890997334606357E-4 0.0 0.0 17.40734110408296 0.0 20 1.9890997334606357E-4 0.0 0.0 18.182758483510362 0.0 21 1.9890997334606357E-4 0.0 0.0 19.090252085239555 0.0 22 1.9890997334606357E-4 0.0 0.0 20.047804696927503 0.0 23 1.9890997334606357E-4 0.0 0.0 20.945684316611636 0.0 24 1.9890997334606357E-4 0.0 0.0 21.544071819761044 0.0 25 1.9890997334606357E-4 0.0 0.0 22.022052485711633 0.0 26 1.9890997334606357E-4 0.0 0.0 22.435321107000306 0.0 27 1.9890997334606357E-4 0.0 0.0 22.849053851560118 0.0 28 1.9890997334606357E-4 0.0 0.0 23.237790242802774 0.0 29 1.9890997334606357E-4 0.0 0.0 23.644561138295476 0.0 30 1.9890997334606357E-4 0.0 0.0 24.05066900054369 0.0 31 1.9890997334606357E-4 0.0 0.0 24.412154725437933 0.0 32 3.315166222434393E-4 0.0 0.0 24.726896606595854 0.0 33 3.315166222434393E-4 0.0 0.0 25.020023603983503 0.0 34 3.315166222434393E-4 0.0 0.0 25.305857235681795 0.0 35 3.315166222434393E-4 0.0 0.0 25.595204943575872 0.0 36 3.9781994669212714E-4 0.0 0.0 25.859688904801686 0.0 37 3.9781994669212714E-4 0.0 0.0 26.142804100197583 0.0 38 3.9781994669212714E-4 0.0 0.0 26.433411571256183 0.0 39 3.9781994669212714E-4 0.0 0.0 26.843696542944663 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 25 3.8913866E-5 45.000004 1 CGCGTCA 30 2.1659544E-6 45.000004 39 AGTCGAA 25 3.8913866E-5 45.000004 25 CGGCCTA 20 7.033989E-4 45.0 45 CGTTCGC 20 7.033989E-4 45.0 44 TACCGGT 20 7.033989E-4 45.0 40 CGTTTTT 33195 0.0 44.254402 1 CGTTATT 2360 0.0 44.141945 1 GCGTAAG 100 0.0 42.750004 1 CGGTCTA 245 0.0 40.408165 31 TAGCCGT 45 1.9290383E-8 40.0 44 ACGATAG 85 0.0 39.705883 1 GACGGTC 250 0.0 39.6 29 ATCGGTT 40 3.4591721E-7 39.375 10 GTTATTT 2710 0.0 39.271217 2 TCACGAC 260 0.0 38.942307 25 CGACGGT 255 0.0 38.82353 28 TCGTTAG 35 6.2495874E-6 38.571426 1 GCGCGAC 105 0.0 38.571426 9 CTACGGG 280 0.0 38.571426 3 >>END_MODULE