SRR2935154.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935154.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	524827
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	1966	0.3745996299733055	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGCT	1839	0.35040117981734936	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	1384	0.2637059450066403	TruSeq Adapter, Index 20 (95% over 21bp)
GTTGATGGGTCCTACACCTGTCTCTTATACACATCTGACGCGTGCATACTC	631	0.12023009486935696	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	590	0.11241799678751285	No Hit
TCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	574	0.10936937314581757	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGGTCC	20	7.029778E-4	45.000004	30
CGAACCG	20	7.029778E-4	45.000004	36
CGAGTTA	20	7.029778E-4	45.000004	18
CCTAGTT	20	7.029778E-4	45.000004	38
TCATTAG	20	7.029778E-4	45.000004	36
TTGCTAT	30	2.1632386E-6	45.000004	24
CGGTTGC	20	7.029778E-4	45.000004	20
GACGTAT	20	7.029778E-4	45.000004	9
CCGGATA	20	7.029778E-4	45.000004	21
AAGCGTA	20	7.029778E-4	45.000004	8
TAACGAT	20	7.029778E-4	45.000004	18
TCGATCC	20	7.029778E-4	45.000004	34
CCGTATT	20	7.029778E-4	45.000004	11
TACGCTT	20	7.029778E-4	45.000004	33
TCGGAGT	30	2.1632386E-6	45.000004	44
CTTATGT	20	7.029778E-4	45.000004	43
GTTCGAC	30	2.1632386E-6	45.000004	10
TACGATG	20	7.029778E-4	45.000004	1
AATGACG	20	7.029778E-4	45.000004	31
GAGCGAT	40	6.8030204E-9	45.000004	21