SRR2935153.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935153.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	943799
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGCT	5373	0.5692949452160895	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	4273	0.45274470517557236	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	4143	0.4389705858980567	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	1445	0.1531046335077702	No Hit
ACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	1327	0.1406019713943329	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCC	1320	0.13986028804862052	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTG	1101	0.1166561948041903	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1087	0.11517282811276552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	20	7.032643E-4	45.000004	13
ATCTCGC	20	7.032643E-4	45.000004	36
TCCGCGA	20	7.032643E-4	45.000004	31
GTTTCGA	20	7.032643E-4	45.000004	13
CCTAGTA	20	7.032643E-4	45.000004	19
TCCGATT	20	7.032643E-4	45.000004	42
CTATCGC	20	7.032643E-4	45.000004	30
TTTCGCG	20	7.032643E-4	45.000004	43
TGACGTA	30	2.1650867E-6	45.000004	26
ATGTACG	35	1.2116107E-7	45.000004	1
CCGTAAC	20	7.032643E-4	45.000004	15
CGGATAT	20	7.032643E-4	45.000004	10
TGCGACG	20	7.032643E-4	45.000004	1
AGCGCTA	30	2.1650867E-6	45.000004	22
TCTCGCA	20	7.032643E-4	45.000004	37
AACGCGT	30	2.1650867E-6	45.000004	37
GTCCGCA	20	7.032643E-4	45.000004	2
TCCGTAC	20	7.032643E-4	45.000004	32
CGTAACG	20	7.032643E-4	45.000004	14
ACCAACG	20	7.032643E-4	45.000004	29