SRR2935152.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935152.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475325
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGCT	3204	0.6740651133435018	No Hit
CCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	2488	0.5234313364540052	No Hit
GCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	2175	0.45758165465733974	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1135	0.23878398990164626	No Hit
TCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	761	0.16010098353757954	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCC	749	0.15757639509809077	No Hit
TGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGCTT	700	0.1472676589701783	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	667	0.1403250407615842	No Hit
AAAACTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTC	648	0.13632777573239363	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTG	506	0.10645347919844315	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGTA	45	3.8380676E-10	45.000004	31
GCGTAAG	45	3.8380676E-10	45.000004	1
TGATCGA	20	7.029108E-4	45.0	21
TGATCAT	20	7.029108E-4	45.0	30
AGTCCGC	20	7.029108E-4	45.0	23
AAATCGC	20	7.029108E-4	45.0	11
ATTAGGT	20	7.029108E-4	45.0	12
GGTCGCA	20	7.029108E-4	45.0	18
TTTACGG	25	3.887341E-5	45.0	2
TTTACGA	25	3.887341E-5	45.0	17
CGACGGA	20	7.029108E-4	45.0	3
ACGTTAT	20	7.029108E-4	45.0	44
ACGTTAA	20	7.029108E-4	45.0	43
GGGTCGT	55	1.8189894E-12	45.0	7
CGGCCAA	25	3.887341E-5	45.0	23
ACCGCGA	20	7.029108E-4	45.0	41
GACGTAA	25	3.887341E-5	45.0	20
TGGCGTT	35	1.209919E-7	45.0	35
ATTACGA	20	7.029108E-4	45.0	23
TCTTACG	20	7.029108E-4	45.0	28