SRR2935150.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935150.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1244244
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	4778	0.38400828133388626	No Hit
CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT	4310	0.34639508006468184	Illumina Single End Adapter 1 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	3851	0.309505209589116	Illumina Single End Adapter 1 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	3228	0.2594346446516921	Illumina Single End Adapter 1 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2550	0.2049437248642549	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCC	1341	0.10777628825214347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTCGT	30	2.165647E-6	45.000004	30
AGCCGTA	20	7.0335116E-4	45.0	12
CGAACCC	40	6.8157533E-9	45.0	19
GTCGATC	20	7.0335116E-4	45.0	21
CGCGCTA	20	7.0335116E-4	45.0	16
CGATTTA	25	3.8909922E-5	45.0	13
CCGTCAA	25	3.8909922E-5	45.0	27
CGCTATA	25	3.8909922E-5	45.0	18
CGTACAT	25	3.8909922E-5	45.0	35
CGTCGTG	20	7.0335116E-4	45.0	21
TATCGAT	20	7.0335116E-4	45.0	25
CGATATA	20	7.0335116E-4	45.0	19
ATCGAAT	50	2.1827873E-11	45.0	10
AGTCGAC	20	7.0335116E-4	45.0	12
TATCCCG	20	7.0335116E-4	45.0	1
CGCAATC	120	0.0	43.125004	20
CGTAAGG	230	0.0	43.04348	2
CGGTCTA	75	0.0	42.000004	31
TAAACGG	60	3.6379788E-12	41.250004	2
AATGCGA	55	6.184564E-11	40.90909	25