##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935148.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 482464 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.922669877959805 33.0 31.0 34.0 30.0 34.0 2 32.252887262054784 34.0 31.0 34.0 30.0 34.0 3 32.306178284804666 34.0 31.0 34.0 30.0 34.0 4 35.86257005704053 37.0 35.0 37.0 35.0 37.0 5 30.356072162897128 37.0 35.0 37.0 0.0 37.0 6 32.830144839822246 37.0 35.0 37.0 17.0 37.0 7 35.05836912184122 37.0 35.0 37.0 32.0 37.0 8 35.630596272468 37.0 35.0 37.0 35.0 37.0 9 37.54935290508722 39.0 37.0 39.0 35.0 39.0 10 37.338835643695695 39.0 37.0 39.0 34.0 39.0 11 37.150796743383964 39.0 37.0 39.0 34.0 39.0 12 36.979368408834645 39.0 37.0 39.0 33.0 39.0 13 36.89550722955495 39.0 37.0 39.0 33.0 39.0 14 38.048782914372886 40.0 37.0 41.0 33.0 41.0 15 38.2184701863766 40.0 37.0 41.0 33.0 41.0 16 38.3087048981893 40.0 37.0 41.0 34.0 41.0 17 38.31074028321284 40.0 37.0 41.0 34.0 41.0 18 38.242500994892886 40.0 37.0 41.0 34.0 41.0 19 38.21832302513763 40.0 37.0 41.0 34.0 41.0 20 38.15612978377661 40.0 36.0 41.0 34.0 41.0 21 38.1129037606951 40.0 36.0 41.0 34.0 41.0 22 38.078667009351996 40.0 36.0 41.0 34.0 41.0 23 38.03236718180009 40.0 36.0 41.0 34.0 41.0 24 38.00788038071234 40.0 36.0 41.0 34.0 41.0 25 37.92175996551038 40.0 36.0 41.0 34.0 41.0 26 37.8742849207402 40.0 36.0 41.0 34.0 41.0 27 37.85751475757777 40.0 36.0 41.0 34.0 41.0 28 37.8268658386947 40.0 36.0 41.0 33.0 41.0 29 37.86117306161703 40.0 36.0 41.0 34.0 41.0 30 37.71995838031439 40.0 36.0 41.0 33.0 41.0 31 33.10405750480865 38.0 33.0 41.0 9.0 41.0 32 34.0154208396896 38.0 33.0 41.0 16.0 41.0 33 35.97576814021357 38.0 34.0 41.0 30.0 41.0 34 36.827771605757114 38.0 35.0 41.0 31.0 41.0 35 37.00134932347284 39.0 35.0 41.0 32.0 41.0 36 37.139115042780396 39.0 35.0 41.0 33.0 41.0 37 37.22628216820323 39.0 35.0 41.0 33.0 41.0 38 37.23459574185846 39.0 35.0 41.0 33.0 41.0 39 37.22858907607614 39.0 35.0 41.0 33.0 41.0 40 37.213246998739805 39.0 35.0 41.0 33.0 41.0 41 37.12864794057173 39.0 35.0 41.0 33.0 41.0 42 37.04220833056974 39.0 35.0 41.0 32.0 41.0 43 37.01182678914903 39.0 35.0 41.0 32.0 41.0 44 36.93221048617099 39.0 35.0 41.0 32.0 41.0 45 36.91841463819062 39.0 35.0 41.0 32.0 41.0 46 36.85397666976189 39.0 35.0 41.0 32.0 41.0 47 36.73767576440937 39.0 35.0 41.0 31.0 41.0 48 36.77082642435498 39.0 35.0 41.0 32.0 41.0 49 36.767912217284604 39.0 35.0 41.0 32.0 41.0 50 36.58442495191351 39.0 35.0 41.0 31.0 41.0 51 35.98354488625058 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 6.0 12 4.0 13 3.0 14 9.0 15 18.0 16 28.0 17 60.0 18 136.0 19 222.0 20 417.0 21 677.0 22 1100.0 23 1592.0 24 2161.0 25 2633.0 26 2984.0 27 3454.0 28 4271.0 29 5225.0 30 7089.0 31 10117.0 32 16120.0 33 17579.0 34 32136.0 35 49696.0 36 53461.0 37 53666.0 38 83428.0 39 134036.0 40 132.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.106279432247796 22.53038568680772 25.328729190157194 11.034605690787291 2 30.656795118392253 25.177837102871926 25.7051303309677 18.460237447768122 3 29.888654904821916 26.44819095310738 26.791014459109903 16.872139682960803 4 27.388157458380313 27.031861444584464 26.69235424819261 18.887626848842608 5 20.594489951581878 40.582302513762684 21.585651986469458 17.23755554818598 6 25.03191948000265 34.20731909531074 24.16843536512569 16.59232605956092 7 80.61326855475227 5.963139218677456 8.251807388737813 5.17178483783246 8 80.43398056642567 4.839946607415269 8.543020826424355 6.183051999734696 9 75.01969058831332 6.647749883929163 10.870033826358029 7.462525701399484 10 39.66409929030974 22.78055979306228 20.392609604032632 17.162731312595344 11 27.24244710486171 29.33503846919148 25.5494710486171 17.873043377329708 12 25.65538568680772 25.81581216422365 28.462434502885188 20.06636764608344 13 21.936973535849308 29.14932513099423 30.659904158652253 18.25379717450421 14 16.59419148371692 32.87830801883664 28.861842541619687 21.665657955826756 15 15.181029050872189 31.024076407773432 34.726321549379854 19.06857299197453 16 16.467549910459642 31.868077203687733 31.27528686078132 20.3890860250713 17 17.49249684950587 30.635653644624263 27.371368640976325 24.500480864893547 18 17.767128739139086 29.813001591828613 31.714283345493133 20.705586323539166 19 17.31631790143928 31.152168866485376 29.440953107382107 22.090560124693244 20 20.60485341911521 31.605052397691846 28.85748988525569 18.932604297937257 21 19.38051336472773 30.844995688797503 30.82468329243218 18.94980765404258 22 18.477855342574784 28.044786761292034 28.232987331697284 25.244370564435897 23 17.284398421436624 29.04506864760894 29.101031372288915 24.569501558665515 24 19.798161106320887 27.110416528487097 30.68954367579757 22.40187868939444 25 17.48772965444054 31.69044737016648 27.70009783113351 23.121725144259468 26 18.997479604695894 30.924379850102806 27.910890760761426 22.167249784439875 27 19.18485109769848 30.253863500696426 29.066002852026262 21.49528254957883 28 16.347333687073025 28.73209192810241 30.80996716853485 24.11060721628971 29 18.08694534721762 26.30828414140744 29.327991311268818 26.27677920010612 30 19.344655767062413 28.778520262651718 26.6359769848113 25.240846985474562 31 21.618400543874777 30.141730781985803 25.879236585527625 22.360632088611794 32 18.788759368574652 29.843470186376603 26.324451150759437 25.04331929428931 33 18.269964183856207 29.458778271539433 25.51610068315978 26.755156861444583 34 17.149880612854016 28.61560655302779 28.972109836174305 25.262402997943887 35 18.076789149034955 26.81008323937123 28.272575777674604 26.840551833919214 36 19.44476686343437 27.784663726205476 28.508448298733168 24.262121111626982 37 16.677306493334218 28.705768720567754 32.13234562578762 22.484579160310407 38 16.779904821914172 28.567105524971808 28.821010479538366 25.831979173575647 39 19.64457451747695 27.625273595542883 28.482954168601182 24.247197718378988 40 20.339134111560657 26.52964780791935 29.671436625323338 23.45978145519666 41 17.281703919877963 27.558325595277577 29.175233799827556 25.984736685016912 42 20.632627512104527 26.88967467002719 29.372554221662135 23.105143596206144 43 21.117637792664322 25.55921270809843 29.483443324268755 23.839706174968494 44 18.546254228294753 25.526878689394444 28.241070836373282 27.68579624593752 45 18.877677920010612 24.954193473502688 28.003747429860056 28.16438117662665 46 21.810124693241363 24.911081448564037 29.583347151290045 23.69544670690456 47 17.044380513364725 26.320720302447437 32.01440936525834 24.620489818929496 48 17.40046925780991 23.584764873648602 32.76534622272335 26.249419645818133 49 20.01227034555946 21.831887975061353 32.57009849439544 25.58574318498375 50 18.465419181534788 23.01684685282218 32.04384161305299 26.47389235259004 51 17.407930954433905 23.253133912582076 29.362190754128804 29.97674437885521 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1251.0 1 1234.0 2 1217.0 3 1289.0 4 1361.0 5 1130.0 6 899.0 7 890.0 8 881.0 9 984.0 10 1087.0 11 1204.5 12 1322.0 13 1334.0 14 1346.0 15 1420.0 16 1494.0 17 1558.0 18 1622.0 19 1620.5 20 1619.0 21 1886.0 22 2153.0 23 2180.0 24 2207.0 25 2140.5 26 3615.5 27 5157.0 28 6136.5 29 7116.0 30 8552.0 31 9988.0 32 10732.5 33 11477.0 34 13049.5 35 14622.0 36 15372.0 37 16122.0 38 18289.0 39 20456.0 40 22551.5 41 24647.0 42 28701.0 43 32755.0 44 36648.0 45 40541.0 46 46275.0 47 52009.0 48 56822.0 49 61635.0 50 58169.0 51 54703.0 52 46161.0 53 37619.0 54 30880.0 55 24141.0 56 20272.5 57 16404.0 58 13798.0 59 11192.0 60 9347.5 61 7503.0 62 6776.5 63 6050.0 64 4653.5 65 3257.0 66 2484.0 67 1711.0 68 1523.5 69 1336.0 70 981.5 71 627.0 72 574.5 73 522.0 74 392.0 75 143.5 76 25.0 77 28.0 78 31.0 79 27.0 80 23.0 81 11.5 82 0.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 482464.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.998580779661317 #Duplication Level Percentage of deduplicated Percentage of total 1 70.48513767111069 21.14454096192363 2 12.59180161849985 7.554723560280757 3 5.317886346758708 4.785871294508973 4 2.827146049989739 3.3924147662607034 5 1.6645585952085935 2.4967197740422273 6 1.048943165595792 1.888008377183941 7 0.6661769899422159 1.3989054972433232 8 0.49302548565814075 1.1832051886357988 9 0.35443561212010194 0.9569308807236224 >10 3.28628587074216 24.635859774259714 >50 1.1758048335099742 23.253425914743133 >100 0.07961178560223782 4.080906093470341 >500 0.006123983507864449 1.164267283433382 >1k 0.0030619917539322244 2.064220633290468 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT 3110 0.6446076805730583 Illumina PCR Primer Index 7 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 2430 0.5036645221197851 Illumina PCR Primer Index 7 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 2423 0.502213636665119 RNA PCR Primer, Index 14 (95% over 24bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1026 0.21265835378390927 No Hit TCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 850 0.1761789480665915 RNA PCR Primer, Index 14 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCC 752 0.15586655170126681 No Hit ACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 712 0.1475757776746037 RNA PCR Primer, Index 14 (95% over 24bp) TGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCTT 625 0.1295433441666114 RNA PCR Primer, Index 14 (96% over 26bp) GCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 555 0.11503448961995091 RNA PCR Primer, Index 14 (95% over 23bp) AAAACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 548 0.11358360416528487 No Hit AGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 517 0.10715825429462095 Illumina PCR Primer Index 7 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 511 0.10591463819062147 Illumina PCR Primer Index 7 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 491 0.10176925117728992 Illumina PCR Primer Index 7 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6746617364197122 0.0 2 0.0 0.0 0.0 2.07828977913378 0.0 3 0.0 0.0 0.0 2.9025999867347614 0.0 4 0.0 0.0 0.0 3.7700222192743915 0.0 5 0.0 0.0 0.0 6.0974497579093985 0.0 6 0.0 0.0 0.0 7.630621144790077 0.0 7 0.0 0.0 0.0 8.847292233202891 0.0 8 0.0 0.0 0.0 10.895320687139352 0.0 9 0.0 0.0 0.0 11.589880281223055 0.0 10 0.0 0.0 0.0 13.124917092259734 0.0 11 0.0 0.0 0.0 15.491518538170723 0.0 12 0.0 0.0 0.0 17.164389467400678 0.0 13 0.0 0.0 0.0 17.84630563109372 0.0 14 0.0 0.0 0.0 18.1279846786496 0.0 15 0.0 0.0 0.0 18.64823074882271 0.0 16 0.0 0.0 0.0 19.794637527359555 0.0 17 0.0 0.0 0.0 21.04322809577502 0.0 18 0.0 0.0 0.0 22.461572262386415 0.0 19 0.0 0.0 0.0 23.365473900643366 0.0 20 0.0 0.0 0.0 24.113094448497712 0.0 21 2.0726935066657824E-4 0.0 0.0 25.047671950653314 0.0 22 2.0726935066657824E-4 0.0 0.0 25.91820322345294 0.0 23 2.0726935066657824E-4 0.0 0.0 26.77920010612191 0.0 24 2.0726935066657824E-4 0.0 0.0 27.45987265371095 0.0 25 2.0726935066657824E-4 0.0 0.0 28.105309411686676 0.0 26 2.0726935066657824E-4 0.0 0.0 28.632809909133115 0.0 27 2.0726935066657824E-4 0.0 0.0 29.148496053591565 0.0 28 2.0726935066657824E-4 0.0 0.0 29.641382569476686 0.0 29 2.0726935066657824E-4 0.0 0.0 30.22215129004444 0.0 30 2.0726935066657824E-4 0.0 0.0 30.88064601711216 0.0 31 2.0726935066657824E-4 0.0 0.0 31.436956954301255 0.0 32 2.0726935066657824E-4 0.0 0.0 32.07099389799031 0.0 33 2.0726935066657824E-4 0.0 0.0 32.64803177024607 0.0 34 4.145387013331565E-4 0.0 0.0 33.22341148769649 0.0 35 4.145387013331565E-4 0.0 0.0 33.8392087285269 0.0 36 4.145387013331565E-4 0.0 0.0 34.415832062081314 0.0 37 4.145387013331565E-4 0.0 0.0 35.04717450421171 0.0 38 4.145387013331565E-4 0.0 0.0 35.62545599257147 0.0 39 4.145387013331565E-4 0.0 0.0 36.200421171320556 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCATCG 20 7.029211E-4 45.000004 43 GTCGCGC 20 7.029211E-4 45.000004 30 CCGGGTG 20 7.029211E-4 45.000004 3 TCGCAGG 20 7.029211E-4 45.000004 2 CAACGGC 20 7.029211E-4 45.000004 18 ACGTTGT 20 7.029211E-4 45.000004 25 CCAGGTA 20 7.029211E-4 45.000004 25 AGCCCGT 20 7.029211E-4 45.000004 35 ACCGCCC 20 7.029211E-4 45.000004 10 CGGTTTG 20 7.029211E-4 45.000004 32 GAACTCG 20 7.029211E-4 45.000004 16 CGTTGAG 20 7.029211E-4 45.000004 17 CGGCAGT 20 7.029211E-4 45.000004 43 CCGTGCC 20 7.029211E-4 45.000004 38 CCGTGAG 20 7.029211E-4 45.000004 4 TCGGGAC 20 7.029211E-4 45.000004 5 CGACCCG 20 7.029211E-4 45.000004 32 GCGCCTT 20 7.029211E-4 45.000004 9 CCTCGGC 20 7.029211E-4 45.000004 15 GCTTGCG 20 7.029211E-4 45.000004 1 >>END_MODULE