SRR2935145.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935145.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	758831
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGCT	3495	0.4605768609874926	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC	3184	0.41959276835026504	TruSeq Adapter, Index 21 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC	2962	0.3903372424162956	TruSeq Adapter, Index 21 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1767	0.23285817263659497	No Hit
TCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC	1018	0.13415371802153575	TruSeq Adapter, Index 21 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	924	0.12176624307652165	No Hit
GCCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTG	871	0.11478181571390732	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCC	852	0.11227796439523426	No Hit
ACTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC	848	0.11175083780182939	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGC	826	0.1088516415381027	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCG	789	0.10397572054910778	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	786	0.10358037560405413	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCTA	45	3.8380676E-10	45.000004	31
ACGCTAA	65	0.0	45.000004	25
CTTCGTC	20	7.031769E-4	45.0	29
CTTAACG	25	3.8895487E-5	45.0	1
AACGTAG	25	3.8895487E-5	45.0	1
CGGGTAG	55	1.8189894E-12	45.0	6
TCGCAAG	20	7.031769E-4	45.0	2
AAATCCG	25	3.8895487E-5	45.0	15
CTCGTAT	20	7.031769E-4	45.0	28
CTATCGA	20	7.031769E-4	45.0	11
TTAGACG	35	1.2111923E-7	45.0	1
GGTCCGT	20	7.031769E-4	45.0	9
GATTTCG	20	7.031769E-4	45.0	9
TTCGTCG	20	7.031769E-4	45.0	30
TTCGTAG	35	1.2111923E-7	45.0	1
TAAGTCG	20	7.031769E-4	45.0	25
TAACGCG	20	7.031769E-4	45.0	1
CAGATAG	40	6.8102963E-9	45.0	1
CGCTATC	20	7.031769E-4	45.0	1
TACGACG	35	1.2111923E-7	45.0	1