SRR2935142.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935142.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	683252
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3832	0.5608472423059135	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	3716	0.5438696117976969	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2954	0.43234414242475694	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	944	0.13816278620479705	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	862	0.12616135774209222	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	811	0.11869705467382459	No Hit
ACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	744	0.1088910094664926	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	696	0.10186578304929952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	40	6.8084773E-9	45.0	1
GTACCGG	45	3.8380676E-10	45.0	2
TCCGCTT	20	7.0312765E-4	45.0	31
TCCGCTA	25	3.8891383E-5	45.0	27
GTCGATT	20	7.0312765E-4	45.0	32
CAACGAA	20	7.0312765E-4	45.0	14
CGACGGA	20	7.0312765E-4	45.0	21
GACGTTC	25	3.8891383E-5	45.0	42
CGCATCG	20	7.0312765E-4	45.0	21
CGCGATT	25	3.8891383E-5	45.0	27
CGATTAT	25	3.8891383E-5	45.0	34
CACGACG	20	7.0312765E-4	45.0	26
CGCGAGG	70	0.0	45.0	2
CGTTCTA	20	7.0312765E-4	45.0	44
TAACGCC	35	1.2109558E-7	45.0	12
ATCCGTT	25	3.8891383E-5	45.0	40
GTGGACG	35	1.2109558E-7	45.0	12
ACGATTC	25	3.8891383E-5	45.0	24
ACGATCT	20	7.0312765E-4	45.0	12
TAATTCG	20	7.0312765E-4	45.0	26