##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935139.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 525612 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.008418757562616 33.0 31.0 34.0 30.0 34.0 2 32.31792843390181 34.0 31.0 34.0 30.0 34.0 3 32.37097326545056 34.0 31.0 34.0 30.0 34.0 4 35.901046779753884 37.0 35.0 37.0 35.0 37.0 5 30.358564872948108 37.0 35.0 37.0 0.0 37.0 6 32.858928258867756 37.0 35.0 37.0 17.0 37.0 7 35.08271120141854 37.0 35.0 37.0 32.0 37.0 8 35.62949285784951 37.0 35.0 37.0 35.0 37.0 9 37.510992899705485 39.0 37.0 39.0 35.0 39.0 10 37.37181989756703 39.0 37.0 39.0 34.0 39.0 11 37.23765629399633 39.0 37.0 39.0 34.0 39.0 12 37.070247635137704 39.0 37.0 39.0 34.0 39.0 13 36.97434229051087 39.0 37.0 39.0 33.0 39.0 14 38.13162941485354 40.0 37.0 41.0 33.0 41.0 15 38.28760568632375 40.0 37.0 41.0 34.0 41.0 16 38.372771169608 40.0 37.0 41.0 34.0 41.0 17 38.349628623395205 40.0 37.0 41.0 34.0 41.0 18 38.27478824684368 40.0 37.0 41.0 34.0 41.0 19 38.22661202560063 40.0 37.0 41.0 34.0 41.0 20 38.16242779845209 40.0 36.0 41.0 34.0 41.0 21 38.10914705143718 40.0 36.0 41.0 34.0 41.0 22 38.11173641393271 40.0 36.0 41.0 34.0 41.0 23 38.00270161259636 40.0 36.0 41.0 34.0 41.0 24 37.96418460765736 40.0 36.0 41.0 34.0 41.0 25 37.918093574728125 40.0 36.0 41.0 34.0 41.0 26 37.80754815339071 40.0 36.0 41.0 33.0 41.0 27 37.78436945884036 40.0 36.0 41.0 33.0 41.0 28 37.732254971347686 40.0 36.0 41.0 33.0 41.0 29 37.72629430073895 40.0 36.0 41.0 33.0 41.0 30 37.57686087836655 39.0 36.0 41.0 33.0 41.0 31 32.97454015509539 38.0 33.0 40.0 9.0 41.0 32 33.84716102372092 38.0 33.0 40.0 16.0 41.0 33 35.79753125879927 38.0 34.0 40.0 29.0 41.0 34 36.68039352221791 38.0 35.0 40.0 31.0 41.0 35 36.80817218784959 39.0 35.0 40.0 32.0 41.0 36 36.986805856791705 39.0 35.0 41.0 32.0 41.0 37 37.058527963592915 39.0 35.0 41.0 32.0 41.0 38 37.041692351011775 39.0 35.0 41.0 32.0 41.0 39 37.081440301971796 39.0 35.0 41.0 32.0 41.0 40 37.037267033477164 39.0 35.0 41.0 32.0 41.0 41 36.99525124997146 39.0 35.0 41.0 32.0 41.0 42 36.91567544119997 39.0 35.0 41.0 32.0 41.0 43 36.9106983858816 39.0 35.0 41.0 32.0 41.0 44 36.84790491845696 39.0 35.0 41.0 32.0 41.0 45 36.842728096009985 39.0 35.0 41.0 32.0 41.0 46 36.785288387631944 39.0 35.0 41.0 32.0 41.0 47 36.67502073773049 39.0 35.0 41.0 31.0 41.0 48 36.694015737844644 39.0 35.0 41.0 32.0 41.0 49 36.70158786329079 39.0 35.0 41.0 32.0 41.0 50 36.50183024740683 39.0 35.0 41.0 31.0 41.0 51 35.90402235869805 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 2.0 11 5.0 12 7.0 13 9.0 14 12.0 15 14.0 16 43.0 17 79.0 18 123.0 19 284.0 20 407.0 21 730.0 22 1238.0 23 1938.0 24 2506.0 25 2896.0 26 3322.0 27 3678.0 28 4342.0 29 5557.0 30 7406.0 31 10611.0 32 17666.0 33 19631.0 34 35869.0 35 57434.0 36 59357.0 37 58690.0 38 93641.0 39 137973.0 40 137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.475841495247444 22.40949597802181 25.467074572117838 10.647587954612908 2 30.646941089625045 25.514257665350105 25.488763574652022 18.350037670372824 3 30.845186182963857 25.82456260511556 26.263289270412393 17.066961941508186 4 26.526220862537386 26.878952535330242 26.25073247947155 20.34409412266082 5 21.87126625723918 41.523405097296106 20.005631530482564 16.599697114982153 6 25.63544972337009 33.935869044085756 24.804418468375914 15.624262764168245 7 78.89393697251965 6.7070386520855685 8.914941059184342 5.4840833162104365 8 78.83324581630556 6.171662747425858 8.54775005136869 6.447341384899888 9 73.96577703705395 8.254758262748949 10.605731984810088 7.173732715387016 10 38.30487127386741 28.546912931972635 18.75775286713393 14.390462927026018 11 27.4978501251874 27.027731482538453 26.867347016430372 18.607071375843777 12 25.585222559606706 24.472234271668075 30.85736246508832 19.085180703636905 13 21.793642458695768 29.826183572673383 30.23028393567879 18.14989003295206 14 16.700341696917118 34.695174387190555 28.126831198678875 20.477652717213456 15 16.06051612215855 28.83020174577445 36.737555459159985 18.37172667290701 16 17.809905405508246 29.199105043263852 32.21425690433247 20.77673264689543 17 17.48552163953639 29.107212164105846 27.395873762395073 26.011392433962694 18 20.213769853047495 28.292352533808206 31.090424115126748 20.403453498017548 19 19.63025958311454 30.54287192834258 27.648912125293947 22.177956363248935 20 23.234629346361952 30.235040295883657 27.39321020068035 19.13712015707404 21 21.33874416870239 30.24930937649825 28.99382053682184 19.41812591797752 22 20.361026764990147 27.09165696369185 26.569598867605766 25.97771740371224 23 17.594537415431915 29.624513899987065 27.76002069967961 25.02092798490141 24 20.896783178466244 27.002617900656755 31.115918205824826 20.984680715052168 25 17.87611393955998 30.935557026856316 27.182218061992497 24.006110971591212 26 17.658462896585313 33.93567878967756 27.442295837994568 20.963562475742563 27 19.924202643775256 30.867255694314437 29.080196038142205 20.1283456237681 28 15.86189052000335 31.651484364892735 30.139532582969945 22.34709253213397 29 17.06258609011971 29.5025608243343 28.879287383088663 24.555565702457326 30 20.003348477584225 30.049161739077494 29.19948555208024 20.748004231258037 31 22.904157439327868 32.41364352412045 21.785271264735204 22.896927771816472 32 20.280929659140202 33.10293524500963 23.306165003843137 23.30997009200703 33 21.324094579271403 29.959171404001435 24.68893404260177 24.0277999741254 34 18.782485940199233 29.0518481313212 25.614331484060486 26.551334444419076 35 18.10803406314924 29.606629985616767 25.93491016186845 26.350425789365538 36 21.62964315883199 27.228449883183792 27.285145696825797 23.85676126115842 37 18.904248761443803 28.514569682579545 29.50731718453917 23.073864371437487 38 19.38121656278776 30.329786991164585 24.73916120636515 25.549835239682505 39 21.71221357198846 26.155795529782427 26.7528138626972 25.379177035531914 40 21.400196342549258 26.801328736786832 27.424221669216074 24.374253251447836 41 18.06446580367267 27.936386536076043 27.03420013241707 26.96494752783422 42 20.736398712358163 26.783254568008342 27.078529409526418 25.401817310107077 43 22.01110324726224 26.3483329908754 27.544462455195085 24.096101306667276 44 19.16622908152782 27.024497157599143 26.608981530102056 27.20029223077099 45 19.811762288532226 27.11011164128673 25.583129761116563 27.49499630906448 46 23.136838580549913 26.29905709915299 27.390546638965624 23.173557681331477 47 17.880489790948456 27.456184409792776 30.14295716231745 24.520368636941317 48 18.520886128931608 25.05212970784533 29.149638897133244 27.277345266089814 49 20.13766808976964 22.641416101611075 31.051231707038653 26.169684101580632 50 19.085180703636905 24.092105964095186 30.59214782006499 26.23056551220292 51 18.26137911615412 24.805369740416886 26.57283319254507 30.36041795088392 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1234.0 1 1168.0 2 1102.0 3 1195.0 4 1288.0 5 1119.0 6 950.0 7 963.0 8 976.0 9 1076.5 10 1177.0 11 1371.0 12 1565.0 13 1661.0 14 1757.0 15 1900.0 16 2043.0 17 2052.0 18 2061.0 19 2129.5 20 2198.0 21 2285.0 22 2372.0 23 2427.0 24 2482.0 25 2673.5 26 4026.5 27 5188.0 28 5545.0 29 5902.0 30 7152.0 31 8402.0 32 10166.0 33 11930.0 34 12111.0 35 12292.0 36 13784.0 37 15276.0 38 17477.5 39 19679.0 40 22472.5 41 25266.0 42 30135.5 43 35005.0 44 39851.5 45 44698.0 46 51808.5 47 58919.0 48 65138.5 49 71358.0 50 65992.0 51 60626.0 52 50627.0 53 40628.0 54 33405.0 55 26182.0 56 22676.0 57 19170.0 58 16093.0 59 13016.0 60 11136.5 61 9257.0 62 8139.5 63 7022.0 64 5929.0 65 4836.0 66 3709.0 67 2582.0 68 2159.0 69 1736.0 70 1495.0 71 1254.0 72 955.5 73 657.0 74 435.0 75 188.0 76 163.0 77 133.5 78 104.0 79 88.0 80 72.0 81 87.5 82 103.0 83 53.5 84 4.0 85 3.0 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 525612.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.063482656106903 #Duplication Level Percentage of deduplicated Percentage of total 1 70.47737817933296 19.778406801835978 2 12.382098781385032 6.949696287952026 3 5.270211044063531 4.437014286873 4 2.9685197286349148 3.332280076754284 5 1.7166548201431522 2.408765638580483 6 1.0665491450080553 1.7958650059691526 7 0.7778640731894143 1.528070244873186 8 0.526301608301174 1.1815884845152933 9 0.40020205082246507 1.0107956980975197 >10 2.8590314796404854 17.95905977252805 >50 1.278778528653504 26.004847272670773 >100 0.26577938540898244 10.3070643064706 >500 0.00835306639856802 1.602127723112227 >1k 0.002278109017791278 1.7044183997674371 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 3107 0.5911204462607398 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT 2806 0.5338538693941538 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 2085 0.39668044108582 TruSeq Adapter, Index 16 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 999 0.19006415378644323 No Hit TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 981 0.18663957443893975 TruSeq Adapter, Index 16 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 795 0.15125225451473712 TruSeq Adapter, Index 13 (95% over 21bp) TGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCTT 724 0.1377441915329178 TruSeq Adapter, Index 16 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC 657 0.12499714618387708 No Hit TGTCAAGGGAGGAAGGACAAACTTGAATAGCGACAAGCCCACCCACGTGAC 606 0.11529417136595053 No Hit GCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG 600 0.11415264491678272 No Hit AAAACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTC 556 0.10578145095621866 No Hit GATGAAGGGGACAATTAGAAGGAAAAGAGAAGATGTAGAAGGAGGAAATGA 543 0.10330814364968838 No Hit ACCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG 531 0.10102509075135271 No Hit GGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG 526 0.10007381871037953 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5738072951150278 0.0 2 0.0 0.0 0.0 1.9870170391847979 0.0 3 0.0 0.0 0.0 2.774099525886015 0.0 4 0.0 0.0 0.0 3.6941698439152835 0.0 5 0.0 0.0 0.0 6.03106473977002 0.0 6 0.0 0.0 0.0 7.4570215291888315 0.0 7 0.0 0.0 0.0 8.68187940914591 0.0 8 0.0 0.0 0.0 10.752798642344542 0.0 9 0.0 0.0 0.0 11.438285275069823 0.0 10 0.0 0.0 0.0 12.881174706817957 0.0 11 0.0 0.0 0.0 15.015829166761794 0.0 12 0.0 0.0 0.0 16.740104868229796 0.0 13 0.0 0.0 0.0 17.42083514075021 0.0 14 0.0 0.0 0.0 17.674254012465468 0.0 15 0.0 0.0 0.0 18.169676491404307 0.0 16 0.0 0.0 0.0 19.223876167210793 0.0 17 0.0 0.0 0.0 20.521411231098224 0.0 18 0.0 0.0 0.0 21.97172058476595 0.0 19 0.0 0.0 0.0 22.838329414092524 0.0 20 0.0 0.0 0.0 23.555398278578114 0.0 21 0.0 0.0 0.0 24.371399435324918 0.0 22 0.0 0.0 0.0 25.171609476191563 0.0 23 0.0 0.0 0.0 26.00206996796116 0.0 24 0.0 0.0 0.0 26.631241295860825 0.0 25 0.0 0.0 0.0 27.17879348264499 0.0 26 0.0 0.0 0.0 27.667557057297017 0.0 27 0.0 0.0 0.0 28.13691468231319 0.0 28 0.0 0.0 0.0 28.606272307329363 0.0 29 0.0 0.0 0.0 29.146594826602133 0.0 30 0.0 0.0 0.0 29.781854295564028 0.0 31 5.707632245839136E-4 0.0 0.0 30.354710318638084 0.0 32 5.707632245839136E-4 0.0 0.0 30.97893503192469 0.0 33 5.707632245839136E-4 0.0 0.0 31.529531289239973 0.0 34 5.707632245839136E-4 0.0 0.0 32.09515764480263 0.0 35 5.707632245839136E-4 0.0 0.0 32.7205238845384 0.0 36 5.707632245839136E-4 0.0 0.0 33.30574644414511 0.0 37 5.707632245839136E-4 0.0 0.0 33.87137279970777 0.0 38 7.610176327785515E-4 0.0 0.0 34.423871601105 0.0 39 7.610176327785515E-4 0.0 0.0 34.95905725135651 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAA 20 7.0297875E-4 45.000004 13 CGTGGCT 20 7.0297875E-4 45.000004 45 AGACTCC 20 7.0297875E-4 45.000004 37 TCCATTG 35 1.2102464E-7 45.000004 12 TTGGCGT 20 7.0297875E-4 45.000004 27 TCCATGC 20 7.0297875E-4 45.000004 23 AGTCCGC 40 6.8030204E-9 45.000004 28 ACACGAT 20 7.0297875E-4 45.000004 21 GCGACTC 20 7.0297875E-4 45.000004 17 TCCGCTG 20 7.0297875E-4 45.000004 38 TCCGCGA 40 6.8030204E-9 45.000004 30 TCACCGT 20 7.0297875E-4 45.000004 44 GATCGCC 20 7.0297875E-4 45.000004 36 GATCGAA 20 7.0297875E-4 45.000004 9 AGATACG 20 7.0297875E-4 45.000004 1 CGAAACT 20 7.0297875E-4 45.000004 15 CATGCGT 20 7.0297875E-4 45.000004 21 CTATCCG 20 7.0297875E-4 45.000004 35 CGTGCAG 35 1.2102464E-7 45.000004 24 GCGCGAG 35 1.2102464E-7 45.000004 1 >>END_MODULE