SRR2935136.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935136.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	402609
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	2216	0.5504099510939895	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	2188	0.5434553127227657	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	1894	0.470431609824917	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	794	0.1972136738125576	No Hit
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	740	0.18380115695376906	No Hit
ACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	649	0.16119858224729203	No Hit
TGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCTT	569	0.14132818690093862	Illumina Single End Adapter 2 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG	520	0.12915756975129716	No Hit
AAAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTC	517	0.12841242992580892	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	500	0.12418997091470882	No Hit
GCAATTGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	468	0.11624181277616744	No Hit
GTGGCATGCCTGTGTATGTGTGTAACAGGATTCTGAATGTTAGGTTGTAAT	460	0.11425477324153212	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	457	0.11350963341604386	No Hit
CGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG	440	0.10928717440494376	No Hit
TTTTTAGGGTACCAAAGCATATTTAATTGATGATACAATAAAAGTAAAAGA	423	0.10506471539384364	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAAAGT	25	3.8862745E-5	45.000004	13
CGGCCTT	25	3.8862745E-5	45.000004	40
CCAATAC	25	3.8862745E-5	45.000004	24
TACGGTG	25	3.8862745E-5	45.000004	40
CGACATA	25	3.8862745E-5	45.000004	21
CATTAGC	25	3.8862745E-5	45.000004	13
AAAGTCC	25	3.8862745E-5	45.000004	25
TAGCAAC	25	3.8862745E-5	45.000004	21
AATGCTC	25	3.8862745E-5	45.000004	24
CTACGGT	25	3.8862745E-5	45.000004	28
TACTCAC	65	0.0	45.000004	30
GTTCAAT	25	3.8862745E-5	45.000004	39
TACTACG	25	3.8862745E-5	45.000004	26
ACCGTTT	25	3.8862745E-5	45.000004	29
CGGTCGT	25	3.8862745E-5	45.000004	31
GAACCGC	25	3.8862745E-5	45.000004	28
GATCTAG	25	3.8862745E-5	45.000004	9
AACAGCC	25	3.8862745E-5	45.000004	32
GTAACGT	25	3.8862745E-5	45.000004	31
TACACGG	25	3.8862745E-5	45.000004	2