SRR2935135.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935135.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441541
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	2488	0.5634810810321125	No Hit
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	2182	0.49417834357398294	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	1869	0.4232902493766151	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	963	0.218099791412349	No Hit
ACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	744	0.16850077342760922	No Hit
TCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	724	0.16397118274407133	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCC	712	0.16125342833394862	No Hit
TGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCTT	541	0.12252542798969972	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	530	0.12003415311375389	No Hit
AAAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC	461	0.10440706525554819	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	447	0.10123635177707166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAA	30	2.1624528E-6	45.000004	10
GGTCGAA	30	2.1624528E-6	45.000004	9
CGAAAGG	55	1.8189894E-12	45.000004	2
ACGCATC	55	1.8189894E-12	45.000004	29
CGGCCGG	65	0.0	45.000004	21
GGCGTAA	30	2.1624528E-6	45.000004	32
GGTCCTT	30	2.1624528E-6	45.000004	9
TACGGGT	45	3.8380676E-10	45.000004	4
CGCGAGG	35	1.2096461E-7	45.000004	2
GTGGCGT	70	0.0	45.000004	34
TCGGCGT	60	0.0	45.000004	4
TAGCACG	45	3.8380676E-10	45.000004	1
CTAACGG	70	0.0	45.000004	2
GGGACGT	35	1.2096461E-7	45.000004	7
TCTACGG	30	2.1624528E-6	45.000004	2
GCCCTAC	30	2.1624528E-6	45.000004	26
ACGTGCG	35	1.2096461E-7	45.000004	1
GGAACGT	55	1.8189894E-12	45.000004	8
GCGATCA	30	2.1624528E-6	45.000004	9
ACGTCGT	45	3.8380676E-10	45.000004	31