SRR2935131.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935131.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	536839
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	4199	0.7821711909902224	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	4101	0.7639161834367473	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	3526	0.6568077207505416	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1265	0.2356386179096526	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1043	0.19428543753341318	No Hit
ACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1004	0.1870206896294792	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	832	0.15498128861725768	No Hit
ACGTATGGGACCTAGATTTTGTTTTGCACTAAAGTTTCTGTGACTTAATAA	821	0.15293225715717373	No Hit
AAAACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	817	0.1521871548080523	No Hit
TGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCTT	762	0.14194199750763264	Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	755	0.14063806839667015	No Hit
GGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	725	0.1350498007782594	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCC	721	0.13430469842913798	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	623	0.1160496908756629	No Hit
ACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	556	0.10356922652787894	No Hit
GGCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	537	0.10002999036955215	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.029925E-4	45.0	11
TCGCCCA	20	7.029925E-4	45.0	32
AACGTAG	20	7.029925E-4	45.0	1
GTCGCTA	25	3.8880185E-5	45.0	19
ACAGTTT	20	7.029925E-4	45.0	10
GCCCATT	25	3.8880185E-5	45.0	9
GTCGCAC	20	7.029925E-4	45.0	27
GTCGCAA	25	3.8880185E-5	45.0	21
ACACGTT	20	7.029925E-4	45.0	28
CGAACGG	20	7.029925E-4	45.0	2
CGAACAT	25	3.8880185E-5	45.0	15
CTCGTTA	20	7.029925E-4	45.0	44
ACGCCGA	25	3.8880185E-5	45.0	12
TCACCGG	20	7.029925E-4	45.0	2
CACGGTA	20	7.029925E-4	45.0	12
CTTCCGC	90	0.0	45.0	21
CGAAAAC	20	7.029925E-4	45.0	43
ACGTTGA	20	7.029925E-4	45.0	38
CCCTAGT	20	7.029925E-4	45.0	11
ACGCAAC	20	7.029925E-4	45.0	28