##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935130.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1680089 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.976034602928774 33.0 31.0 34.0 30.0 34.0 2 32.2892971741378 34.0 31.0 34.0 30.0 34.0 3 32.35737452004031 34.0 31.0 34.0 30.0 34.0 4 35.871575255834664 37.0 35.0 37.0 35.0 37.0 5 30.399121117988393 37.0 35.0 37.0 0.0 37.0 6 32.851814397927726 37.0 35.0 37.0 17.0 37.0 7 35.051538341123596 37.0 35.0 37.0 32.0 37.0 8 35.61808035169565 37.0 35.0 37.0 35.0 37.0 9 37.48719740442322 39.0 37.0 39.0 35.0 39.0 10 37.366477609221896 39.0 37.0 39.0 34.0 39.0 11 37.232358523863915 39.0 37.0 39.0 34.0 39.0 12 37.02981092073099 39.0 37.0 39.0 33.0 39.0 13 36.90946551045808 39.0 37.0 39.0 33.0 39.0 14 37.80657393745212 40.0 37.0 41.0 33.0 41.0 15 37.98091113030321 40.0 37.0 41.0 33.0 41.0 16 38.15856659974561 40.0 37.0 41.0 33.0 41.0 17 38.20051199668589 40.0 37.0 41.0 34.0 41.0 18 38.18743828451945 40.0 37.0 41.0 34.0 41.0 19 38.19471825599715 40.0 37.0 41.0 34.0 41.0 20 38.08790070049861 40.0 37.0 41.0 33.0 41.0 21 38.055003038529506 40.0 36.0 41.0 33.0 41.0 22 38.08939883541884 40.0 36.0 41.0 34.0 41.0 23 38.0368040026451 40.0 36.0 41.0 34.0 41.0 24 38.02349518388609 40.0 36.0 41.0 34.0 41.0 25 37.944949344945414 40.0 36.0 41.0 34.0 41.0 26 37.8821354106836 40.0 36.0 41.0 34.0 41.0 27 37.834100455392544 40.0 36.0 41.0 34.0 41.0 28 37.80567100909535 40.0 36.0 41.0 33.0 41.0 29 37.79726431159302 40.0 36.0 41.0 33.0 41.0 30 37.63380749472201 40.0 36.0 41.0 33.0 41.0 31 33.127844417765964 38.0 33.0 41.0 9.0 41.0 32 34.05444473477298 38.0 33.0 41.0 16.0 41.0 33 35.95870992548609 38.0 34.0 41.0 29.0 41.0 34 36.795467382977925 38.0 35.0 41.0 31.0 41.0 35 36.97248776701711 39.0 35.0 41.0 31.0 41.0 36 37.13765818358432 39.0 35.0 41.0 32.0 41.0 37 37.25000342243774 39.0 35.0 41.0 32.0 41.0 38 37.2635181826677 39.0 35.0 41.0 32.0 41.0 39 37.24801067086327 39.0 35.0 41.0 32.0 41.0 40 37.19593783424568 39.0 35.0 41.0 32.0 41.0 41 37.12468982297962 39.0 35.0 41.0 32.0 41.0 42 37.11088579235981 39.0 35.0 41.0 32.0 41.0 43 37.13993961034207 39.0 35.0 41.0 32.0 41.0 44 37.0851413228704 39.0 35.0 41.0 32.0 41.0 45 37.06525428117201 39.0 35.0 41.0 32.0 41.0 46 37.036257007813276 39.0 35.0 41.0 32.0 41.0 47 36.94938422904977 39.0 35.0 41.0 32.0 41.0 48 36.94260065984599 39.0 35.0 41.0 32.0 41.0 49 36.930246552414786 39.0 35.0 41.0 32.0 41.0 50 36.75049000380337 39.0 35.0 41.0 32.0 41.0 51 36.146915431265846 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 7.0 10 8.0 11 16.0 12 16.0 13 26.0 14 39.0 15 55.0 16 124.0 17 195.0 18 322.0 19 589.0 20 969.0 21 1529.0 22 2530.0 23 3838.0 24 5618.0 25 7547.0 26 9545.0 27 11804.0 28 15324.0 29 19947.0 30 27044.0 31 38881.0 32 55740.0 33 69126.0 34 126325.0 35 150765.0 36 190131.0 37 193048.0 38 290369.0 39 458180.0 40 431.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.41305728446529 21.402080485021923 24.077474467126443 11.107387763386345 2 32.02098222177516 23.290135224979153 25.144620314757134 19.544262238488557 3 33.057653493356604 23.087348348807712 25.74976682782876 18.105231330006923 4 28.985845392714317 25.221580523412747 26.586389173430693 19.206184910442246 5 23.051457393030965 38.27309148503442 20.95216384370114 17.723287278233474 6 27.495805281744 31.797244074569857 24.605839333511497 16.10111131017464 7 79.3458560826242 5.597798688045693 9.172728349510056 5.883616879820057 8 79.69809932688091 4.952594773253083 9.040890095703263 6.308415804162755 9 73.89578766362972 6.961119321654984 11.257558379347762 7.885534635367532 10 40.50446137079643 27.07791075353746 18.291114339776048 14.126513535890062 11 29.53998270329727 23.76856226068976 26.512524038905084 20.17893099710789 12 27.850786476192628 21.2660757852709 30.59034372583833 20.29279401269814 13 25.663283314157763 22.949855632648035 32.46185172333133 18.92500932986288 14 20.13423098419191 26.043382225584477 32.56238211190002 21.26000467832359 15 18.857036740315543 25.979635602637718 35.074629974959656 20.08869768208708 16 24.149673023274364 26.224860706783986 29.31773257250062 20.307733697441027 17 23.780823515897072 25.92047207022961 27.174512778787314 23.124191635085996 18 23.669996053780483 24.632147463616512 30.537846506941 21.160009975662003 19 23.338465997932254 26.693764437479206 27.73091187431142 22.236857690277123 20 22.410122320900857 29.968829032271504 28.63199509073626 18.989053556091374 21 21.97324070331988 27.027794360893974 31.909202429157023 19.089762506629114 22 20.885679270562452 22.656299755548666 32.15793925202772 24.300081721861165 23 20.096375846755738 25.56322909083983 31.793137149281975 22.547257913122458 24 22.159183233745356 26.70834699828402 28.353378898379788 22.77909086959084 25 22.32667436070351 27.440212988716667 26.131948962227597 24.101163688352223 26 19.705503696530364 27.616156048875983 26.688467099064393 25.98987315552926 27 20.67420237856447 26.686145793466892 29.022926761617985 23.616725066350654 28 17.691800851026347 26.624720476117638 28.376115789104027 27.30736288375199 29 19.659851353112842 26.515797675004123 27.82971616384608 25.994634808036952 30 21.898839882887156 27.582645919353084 27.651213715463886 22.867300482295878 31 23.28114760587088 27.75448205422451 25.127180762447704 23.837189577456908 32 21.821820153575196 27.11171848634209 26.126651623812787 24.939809736269925 33 21.236077374472423 27.62835778342695 25.68262752747027 25.452937314630358 34 18.96465008698944 26.373364744367713 28.606579770476444 26.05540539816641 35 18.888642208835364 27.463902209942447 26.89869405727911 26.748761523943077 36 20.861811487367635 28.56021317918277 24.609232010923233 25.968743322526365 37 18.48919908409614 28.774606583341715 27.75025608762393 24.985938244938215 38 19.808057787414835 26.5791871740128 27.13838374038518 26.474371298187176 39 19.983822285605108 25.74500517532107 27.93643670067479 26.334735838399038 40 21.864853588113487 25.761790000410695 27.845072493183398 24.528283918292423 41 18.60115743868331 25.71756615274548 25.891306948619984 29.789969459951227 42 19.506109497770655 24.26758344349615 28.40837598484366 27.81793107388954 43 20.33808923217758 24.226990355868054 28.784903656889604 26.650016755064758 44 20.534566918776324 24.467275245537586 27.91155706632208 27.086600769364004 45 19.974834666496836 23.441377212754798 27.004283701637235 29.57950441911113 46 21.10810796332813 25.2028315166637 27.30849377622257 26.3805667437856 47 17.230218161061707 25.401987632798022 30.8044990473719 26.563295158768373 48 17.834233781662757 26.12736587168894 28.78668927657999 27.251711070068314 49 20.751281628532777 23.591547828716216 30.06459776833251 25.5925727744185 50 19.334630486837305 23.743265981742635 29.352373594494104 27.569729936925963 51 18.471819052443056 23.908673885728675 27.209332362749834 30.41017469907844 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 936.0 1 1432.0 2 1928.0 3 2403.0 4 2878.0 5 2369.0 6 1860.0 7 1867.0 8 1874.0 9 2018.5 10 2163.0 11 2189.0 12 2215.0 13 2413.5 14 2612.0 15 2812.5 16 3013.0 17 3366.5 18 3720.0 19 3817.5 20 3915.0 21 4525.0 22 5135.0 23 5967.0 24 6799.0 25 8209.5 26 12410.5 27 15201.0 28 17730.0 29 20259.0 30 23556.5 31 26854.0 32 28482.5 33 30111.0 34 36373.5 35 42636.0 36 45869.0 37 49102.0 38 53921.5 39 58741.0 40 64817.0 41 70893.0 42 79043.0 43 87193.0 44 100958.5 45 114724.0 46 134207.0 47 153690.0 48 172215.0 49 190740.0 50 190239.5 51 189739.0 52 163640.0 53 137541.0 54 122723.5 55 107906.0 56 96023.5 57 84141.0 58 78389.5 59 72638.0 60 63286.5 61 53935.0 62 47036.5 63 40138.0 64 34219.5 65 28301.0 66 23773.0 67 19245.0 68 16870.0 69 14495.0 70 11822.5 71 9150.0 72 7168.0 73 5186.0 74 4870.0 75 3498.0 76 2442.0 77 1646.5 78 851.0 79 758.0 80 665.0 81 450.0 82 235.0 83 148.5 84 62.0 85 45.5 86 29.0 87 24.0 88 19.0 89 11.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1680089.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.85774827075081 #Duplication Level Percentage of deduplicated Percentage of total 1 66.69906277675283 16.579885123995272 2 13.731123697872771 6.8264963271252475 3 5.927356910798581 4.420222379985789 4 3.155794616922175 3.1378379272656765 5 1.795804547435266 2.2319828691807717 6 1.1385963444126492 1.6981764786844034 7 0.8166815707614554 1.4210605432344738 8 0.5640358310326535 1.1216528562794752 9 0.4425162834596483 0.9899962541953333 >10 3.883191498069274 22.15060960090008 >50 1.6565172749079968 28.773042207867128 >100 0.17848496251901988 6.713001107251891 >500 0.005687684654284497 0.9455831922936725 >1k 0.004604316148706497 2.1320561433646152 >5k 5.416842527889998E-4 0.8583969883762425 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 7160 0.4261678994386607 Illumina PCR Primer Index 8 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT 5590 0.3327204689751555 RNA PCR Primer, Index 29 (96% over 26bp) CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 4853 0.2888537452480196 RNA PCR Primer, Index 29 (96% over 25bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 4087 0.24326092248684447 No Hit TCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 2226 0.13249298102660037 Illumina PCR Primer Index 8 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 2001 0.11910083334870951 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC 1802 0.10725622273581935 No Hit ACTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 1707 0.10160176038293209 TruSeq Adapter, Index 12 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCG 1704 0.10142319841389355 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1904131269236332E-4 0.0 0.0 0.35146947572420273 0.0 2 1.1904131269236332E-4 0.0 0.0 1.3561186341914029 0.0 3 1.7856196903854498E-4 0.0 0.0 1.9523965694674508 0.0 4 1.7856196903854498E-4 0.0 0.0 2.696940459701837 0.0 5 1.7856196903854498E-4 0.0 0.0 4.519165353740188 0.0 6 1.7856196903854498E-4 0.0 0.0 5.63291587528994 0.0 7 1.7856196903854498E-4 0.0 0.0 6.638160240320602 0.0 8 1.7856196903854498E-4 0.0 0.0 8.227837930014422 0.0 9 1.7856196903854498E-4 0.0 0.0 8.79590307418238 0.0 10 1.7856196903854498E-4 0.0 0.0 10.055717286405661 0.0 11 1.7856196903854498E-4 0.0 0.0 11.897822079663637 0.0 12 1.7856196903854498E-4 0.0 0.0 13.442025987908973 0.0 13 1.7856196903854498E-4 0.0 0.0 14.060981293252917 0.0 14 1.7856196903854498E-4 0.0 0.0 14.346323319776511 0.0 15 1.7856196903854498E-4 0.0 0.0 14.859093774198866 0.0 16 1.7856196903854498E-4 0.0 0.0 15.752974991205823 0.0 17 1.7856196903854498E-4 0.0 0.0 16.78119432958611 0.0 18 2.3808262538472665E-4 0.0 0.0 17.832567203285063 0.0 19 2.3808262538472665E-4 0.0 0.0 18.624787139252742 0.0 20 2.3808262538472665E-4 0.0 0.0 19.299453778936712 0.0 21 2.3808262538472665E-4 0.0 0.0 20.04953309021129 0.0 22 2.3808262538472665E-4 0.0 0.0 20.865323206092057 0.0 23 2.976032817309083E-4 0.0 0.0 21.60123660115625 0.0 24 2.976032817309083E-4 0.0 0.0 22.195371792803833 0.0 25 2.976032817309083E-4 0.0 0.0 22.747902045665437 0.0 26 2.976032817309083E-4 0.0 0.0 23.249244534069327 0.0 27 2.976032817309083E-4 0.0 0.0 23.84885562610076 1.1904131269236332E-4 28 2.976032817309083E-4 0.0 0.0 24.380494128584854 1.1904131269236332E-4 29 2.976032817309083E-4 0.0 0.0 25.020341184306307 1.1904131269236332E-4 30 2.976032817309083E-4 0.0 0.0 25.70774524444836 1.1904131269236332E-4 31 3.5712393807708995E-4 0.0 0.0 26.243550192876686 1.1904131269236332E-4 32 3.5712393807708995E-4 0.0 0.0 26.795961404425597 1.1904131269236332E-4 33 3.5712393807708995E-4 0.0 0.0 27.380751853026833 1.1904131269236332E-4 34 3.5712393807708995E-4 0.0 0.0 27.99512406783212 1.1904131269236332E-4 35 3.5712393807708995E-4 0.0 0.0 28.645446759070502 1.1904131269236332E-4 36 3.5712393807708995E-4 0.0 0.0 29.23595119068097 1.1904131269236332E-4 37 3.5712393807708995E-4 0.0 0.0 29.847287852012602 1.1904131269236332E-4 38 3.5712393807708995E-4 0.0 0.0 30.5386202754735 1.1904131269236332E-4 39 3.5712393807708995E-4 0.0 0.0 31.632848021741705 1.1904131269236332E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 30 2.1661035E-6 45.000004 1 CTACCGA 20 7.0342165E-4 45.000004 41 ATACGAT 20 7.0342165E-4 45.000004 42 TTCGATC 20 7.0342165E-4 45.000004 20 AATCCGT 25 3.891578E-5 45.0 9 CGGCATA 25 3.891578E-5 45.0 33 CGCATCG 25 3.891578E-5 45.0 21 ATAGCGT 25 3.891578E-5 45.0 40 TACGCTA 25 3.891578E-5 45.0 1 TAATACG 90 0.0 42.5 4 GCGTAAG 180 0.0 42.5 1 TTGCACG 135 0.0 41.666664 1 TACGTCA 50 1.0822987E-9 40.5 27 CGCCAAT 260 0.0 39.80769 26 TGTTACG 80 0.0 39.375004 1 TGCGTAG 190 0.0 39.078945 1 CTATCCG 35 6.250011E-6 38.57143 33 ATCCGAT 35 6.250011E-6 38.57143 35 GTAGCGT 70 0.0 38.57143 9 GTATCGC 35 6.250011E-6 38.57143 29 >>END_MODULE