##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935129.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 639319 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92924971727729 33.0 31.0 34.0 30.0 34.0 2 32.249305902061415 34.0 31.0 34.0 30.0 34.0 3 32.308686273988414 34.0 31.0 34.0 30.0 34.0 4 35.83808396121498 37.0 35.0 37.0 35.0 37.0 5 30.342702156513415 37.0 35.0 37.0 0.0 37.0 6 32.81815181466529 37.0 35.0 37.0 17.0 37.0 7 35.01956143959432 37.0 35.0 37.0 32.0 37.0 8 35.590833371133975 37.0 35.0 37.0 35.0 37.0 9 37.433326711704176 39.0 37.0 39.0 35.0 39.0 10 37.315283919295375 39.0 37.0 39.0 34.0 39.0 11 37.246313655624185 39.0 37.0 39.0 34.0 39.0 12 37.088534831594245 39.0 37.0 39.0 34.0 39.0 13 37.0029437573418 39.0 37.0 39.0 33.0 39.0 14 38.144583533416025 40.0 37.0 41.0 33.0 41.0 15 38.27251810129216 40.0 37.0 41.0 34.0 41.0 16 38.36686067518719 40.0 37.0 41.0 34.0 41.0 17 38.35325244517995 40.0 37.0 41.0 34.0 41.0 18 38.28311687905412 40.0 37.0 41.0 34.0 41.0 19 38.26557008316662 40.0 37.0 41.0 34.0 41.0 20 38.17698676247695 40.0 37.0 41.0 34.0 41.0 21 38.12940644654703 40.0 37.0 41.0 34.0 41.0 22 38.10582823285402 40.0 36.0 41.0 34.0 41.0 23 38.031882362326165 40.0 36.0 41.0 34.0 41.0 24 38.0010526826201 40.0 36.0 41.0 34.0 41.0 25 37.93296773598157 40.0 36.0 41.0 34.0 41.0 26 37.83903184482238 40.0 36.0 41.0 33.0 41.0 27 37.81012139479665 40.0 36.0 41.0 33.0 41.0 28 37.767616792243 40.0 36.0 41.0 33.0 41.0 29 37.76361878811673 40.0 36.0 41.0 33.0 41.0 30 37.65863363985741 40.0 36.0 41.0 33.0 41.0 31 33.09117983354163 38.0 33.0 41.0 9.0 41.0 32 33.95884370713212 38.0 33.0 41.0 16.0 41.0 33 35.92278189761293 38.0 34.0 41.0 29.0 41.0 34 36.78514638232244 38.0 35.0 41.0 31.0 41.0 35 36.92908235168984 39.0 35.0 41.0 32.0 41.0 36 37.05217426668064 39.0 35.0 41.0 32.0 41.0 37 37.192124745236725 39.0 35.0 41.0 33.0 41.0 38 37.1671356552832 39.0 35.0 41.0 33.0 41.0 39 37.182049962538265 39.0 35.0 41.0 33.0 41.0 40 37.174227576530654 39.0 35.0 41.0 33.0 41.0 41 37.11112605757064 39.0 35.0 41.0 32.0 41.0 42 36.98381559127759 39.0 35.0 41.0 32.0 41.0 43 36.97559590752034 39.0 35.0 41.0 32.0 41.0 44 36.887162746610066 39.0 35.0 41.0 32.0 41.0 45 36.89301897800628 39.0 35.0 41.0 32.0 41.0 46 36.82176816268561 39.0 35.0 41.0 32.0 41.0 47 36.738853373667915 39.0 35.0 41.0 31.0 41.0 48 36.75987887111129 39.0 35.0 41.0 32.0 41.0 49 36.75058617059715 39.0 35.0 41.0 32.0 41.0 50 36.56316173928821 39.0 35.0 41.0 31.0 41.0 51 35.962289561236254 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 5.0 12 7.0 13 9.0 14 16.0 15 24.0 16 32.0 17 86.0 18 152.0 19 283.0 20 479.0 21 869.0 22 1302.0 23 2061.0 24 2983.0 25 3482.0 26 4195.0 27 4756.0 28 5834.0 29 7242.0 30 9581.0 31 13425.0 32 20939.0 33 24030.0 34 41992.0 35 64441.0 36 72649.0 37 71656.0 38 111107.0 39 175513.0 40 164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.46205728282751 22.128233323270543 23.906375377550173 11.503334016351774 2 31.11748594989356 25.054941273448776 24.51718156350742 19.310391213150243 3 30.993134882586006 25.736134855995207 26.198189010493977 17.07254125092481 4 26.329265984586726 27.358016889846855 25.814186657990767 20.498530467575655 5 21.36632885930185 39.72821079930363 21.330978744570395 17.57448159682412 6 26.1963120132516 33.06330642449231 24.497629508899312 16.242752053356774 7 76.82143030318198 6.905160021835735 9.713147896433549 6.560261778548737 8 76.4737165640314 5.740483232940051 10.107786566643568 7.678013636384966 9 70.96676307133059 8.543622197995054 12.503304297228771 7.986310433445588 10 36.143771732108696 29.504676069380075 20.035381398018828 14.316170800492397 11 26.222120725334303 27.319225613504372 26.632088206357075 19.82656545480425 12 24.462122977730992 24.042457677622593 31.2200951324769 20.27532421216951 13 21.91894813074537 27.935506374751885 31.36994207899343 18.775603415509316 14 16.937866698784177 32.394156907584474 29.222500817275883 21.445475576355467 15 15.87532984316124 29.735233897318864 34.7246054004339 19.664830859085995 16 18.210470829116606 29.3643705255123 31.347887361395482 21.077271283975605 17 18.541291593085766 28.265232223662988 26.769734670798144 26.4237415124531 18 18.825969508179796 27.505830422684134 31.740961867236855 21.927238201899208 19 19.92479497715538 28.85820693581764 28.406945515462546 22.81005257156443 20 21.278735654657535 30.21308611194099 28.071275841950577 20.436902391450904 21 20.753645676102227 29.911828054539285 29.506709483059318 19.82781678629917 22 19.50184493187282 27.496132603598518 27.783000348808656 25.21902211572001 23 18.403957961518426 28.35282542830731 28.57227768922869 24.670938920945567 24 20.464744517212846 27.246179137488486 29.310250438357066 22.978825906941605 25 17.84367428466853 30.328521442347245 27.1642169245713 24.66358734841292 26 17.47421866079375 32.05989498200429 26.61425673255448 23.851629624647476 27 19.389694346640724 29.704419859256493 26.66196374579826 24.243922048304526 28 16.038785019685008 29.17886063139059 28.709767737232898 26.072586611691502 29 16.437803350127243 28.484684484584378 27.567614915245752 27.509897250042627 30 18.441967155676586 28.428218150876166 26.927715272031644 26.202099421415596 31 21.955549576971748 28.641883003633556 22.741855005091356 26.660712414303344 32 18.107392397222668 29.73179273570784 25.569082101423547 26.591732765645947 33 18.651095931764893 27.76798437086963 26.654925006139347 26.925994691226133 34 16.82555969711521 25.941666054035622 27.814909301929085 29.41786494692008 35 16.644898712536307 26.439852405450175 28.71758855907614 28.197660322937374 36 18.533940020553118 29.15664949735578 27.60875243814121 24.70065804394989 37 17.194702488116263 27.07943921579055 29.486844595577484 26.239013700515706 38 17.092249721969782 27.876224545180108 27.76485604213233 27.266669690717784 39 19.700806639564913 26.70998359191577 29.12083013331373 24.468379635205586 40 20.01207534892597 24.879129198412684 30.268770363464874 24.840025089196473 41 16.878741285649262 26.906755469491756 28.227848695252295 27.986654549606694 42 19.385314686408506 25.670909201822568 28.579472845324478 26.36430326644445 43 21.351469297799692 24.860046393115173 27.83962309895373 25.94886121013141 44 18.637956951068247 25.200095726859363 26.79632546506517 29.365621857007223 45 19.0729510619894 23.56382338081615 27.22537575138546 30.13784980580899 46 21.253709024759157 24.51170698821715 29.0310470985533 25.20353688847039 47 17.10851703140373 24.7860614184781 31.93335408458062 26.172067465537545 48 17.30919931990133 22.986177479474254 31.584858263245735 28.119764937378676 49 19.991741212133533 21.64944261002723 32.91330306153892 25.44551311630031 50 18.792339974253856 21.493182589599247 32.1679787398779 27.546498696269 51 17.388658869828678 21.773637260897925 29.16587806713081 31.671825802142596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1254.0 1 1313.0 2 1372.0 3 1455.0 4 1538.0 5 1371.0 6 1204.0 7 1212.5 8 1221.0 9 1401.0 10 1581.0 11 1656.0 12 1731.0 13 1803.0 14 1875.0 15 2108.0 16 2341.0 17 2369.0 18 2397.0 19 2446.0 20 2495.0 21 2474.5 22 2454.0 23 2700.5 24 2947.0 25 3112.0 26 4278.0 27 5279.0 28 6526.0 29 7773.0 30 9200.5 31 10628.0 32 11009.5 33 11391.0 34 13007.5 35 14624.0 36 17200.5 37 19777.0 38 21010.5 39 22244.0 40 25457.0 41 28670.0 42 33662.5 43 38655.0 44 45287.5 45 51920.0 46 60333.0 47 68746.0 48 77896.5 49 87047.0 50 82378.5 51 77710.0 52 62847.0 53 47984.0 54 41252.5 55 34521.0 56 29938.0 57 25355.0 58 21854.5 59 18354.0 60 15632.0 61 12910.0 62 11407.0 63 9904.0 64 8224.5 65 6545.0 66 5452.0 67 4359.0 68 3403.0 69 2447.0 70 2296.5 71 2146.0 72 1600.0 73 1054.0 74 916.0 75 583.5 76 389.0 77 344.5 78 300.0 79 186.0 80 72.0 81 50.5 82 29.0 83 16.0 84 3.0 85 2.0 86 1.0 87 8.5 88 16.0 89 8.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 639319.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.99126193933229 #Duplication Level Percentage of deduplicated Percentage of total 1 68.2163305599656 19.094611772440754 2 13.444095244111317 7.526343830305028 3 5.841910161952454 4.905673127077748 4 3.0771103029910973 3.445288020289678 5 1.7973729451429732 2.5155368455083043 6 1.0799726337022586 1.8137878126362288 7 0.7626135056382042 1.4942560076354008 8 0.5035995426710007 1.1277109369145544 9 0.3784993453470597 0.9535206887527807 >10 3.532962410269707 24.720174221437517 >50 1.2604430295287083 23.648935226558663 >100 0.09547839928814314 4.940112205889241 >500 0.005126357008759364 1.0031968472710233 >1k 0.004485562382664443 2.8108524572830693 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCT 4124 0.6450613856306476 TruSeq Adapter, Index 13 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 3799 0.5942260436495709 TruSeq Adapter, Index 16 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 3176 0.4967786034827684 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 1300 0.203341367924307 TruSeq Adapter, Index 16 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 1195 0.18691764205349756 TruSeq Adapter, Index 13 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1070 0.16736558744539112 No Hit TGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCTT 1007 0.15751135192290547 TruSeq Adapter, Index 16 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCC 853 0.13342322064571832 No Hit ACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTG 759 0.11872007558042229 No Hit GCCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTG 744 0.11637382902744953 No Hit GGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTG 729 0.11402758247447675 No Hit AAAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC 717 0.11215058523209853 No Hit AGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTG 648 0.10135785108842377 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5641643686485152E-4 0.0 0.0 0.6768139223142124 0.0 2 1.5641643686485152E-4 0.0 0.0 2.24363737038943 0.0 3 1.5641643686485152E-4 0.0 0.0 3.1311442331605974 0.0 4 1.5641643686485152E-4 0.0 0.0 4.201501910626776 0.0 5 1.5641643686485152E-4 0.0 0.0 6.65129614480408 0.0 6 1.5641643686485152E-4 0.0 0.0 8.148670694911305 0.0 7 1.5641643686485152E-4 0.0 0.0 9.425498069039087 0.0 8 1.5641643686485152E-4 0.0 0.0 11.517255079232745 0.0 9 1.5641643686485152E-4 0.0 0.0 12.26602056250479 0.0 10 1.5641643686485152E-4 0.0 0.0 13.731173326617855 0.0 11 1.5641643686485152E-4 0.0 0.0 15.997960329663282 0.0 12 1.5641643686485152E-4 0.0 0.0 17.74247285001697 0.0 13 1.5641643686485152E-4 0.0 0.0 18.45401122131518 0.0 14 1.5641643686485152E-4 0.0 0.0 18.761369519754613 0.0 15 3.1283287372970304E-4 0.0 0.0 19.309452714529055 0.0 16 3.1283287372970304E-4 0.0 0.0 20.442064133867444 0.0 17 3.1283287372970304E-4 0.0 0.0 21.714042598452416 0.0 18 3.1283287372970304E-4 0.0 0.0 23.090663659299974 0.0 19 3.1283287372970304E-4 0.0 0.0 23.987242675409302 0.0 20 3.1283287372970304E-4 0.0 0.0 24.77870984594545 0.0 21 3.1283287372970304E-4 0.0 0.0 25.6307101775483 0.0 22 3.1283287372970304E-4 0.0 0.0 26.474576854434172 0.0 23 3.1283287372970304E-4 0.0 0.0 27.272300682444914 0.0 24 3.1283287372970304E-4 0.0 0.0 27.91955189819167 0.0 25 3.1283287372970304E-4 0.0 0.0 28.52441425954805 0.0 26 3.1283287372970304E-4 0.0 0.0 29.079379777544542 0.0 27 3.1283287372970304E-4 0.0 0.0 29.595084769887958 0.0 28 3.1283287372970304E-4 0.0 0.0 30.15130161937937 0.0 29 3.1283287372970304E-4 0.0 0.0 30.718780452325053 0.0 30 3.1283287372970304E-4 0.0 0.0 31.37776290083667 0.0 31 3.1283287372970304E-4 0.0 0.0 31.95228047344127 0.0 32 3.1283287372970304E-4 0.0 0.0 32.57403580997906 0.0 33 6.256657474594061E-4 0.0 0.0 33.18703182605241 0.0 34 6.256657474594061E-4 0.0 0.0 33.755761990493006 0.0 35 6.256657474594061E-4 0.0 0.0 34.38768439542701 0.0 36 7.820821843242575E-4 0.0 0.0 34.95438114618837 0.0 37 7.820821843242575E-4 0.0 0.0 35.497615431419995 0.0 38 7.820821843242575E-4 0.0 0.0 36.080110242304706 0.0 39 7.820821843242575E-4 0.0 0.0 36.663230718936866 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGT 25 3.8888556E-5 45.000004 29 TCGTTGA 25 3.8888556E-5 45.000004 24 TCCGCTC 25 3.8888556E-5 45.000004 40 GTCGATG 35 1.2107921E-7 45.000004 1 GATAACG 25 3.8888556E-5 45.000004 12 GGTCGCT 25 3.8888556E-5 45.000004 8 CAACGAC 25 3.8888556E-5 45.000004 12 GCAACGA 25 3.8888556E-5 45.000004 11 TTATGCG 25 3.8888556E-5 45.000004 14 CGTTGAT 25 3.8888556E-5 45.000004 25 CACGCGA 35 1.2107921E-7 45.000004 13 CGACCGA 35 1.2107921E-7 45.000004 17 GCACGAA 25 3.8888556E-5 45.000004 1 AATGCGG 50 2.1827873E-11 45.000004 2 GTTCGCA 25 3.8888556E-5 45.000004 39 TCTCGCG 25 3.8888556E-5 45.000004 1 ACGTGAC 25 3.8888556E-5 45.000004 14 CGGGCAC 50 2.1827873E-11 45.000004 6 CGAATAT 35 1.2107921E-7 45.000004 14 TCCGTGT 25 3.8888556E-5 45.000004 13 >>END_MODULE