SRR2935126.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935126.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395073
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	1543	0.39056073181412043	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT	1537	0.3890420251447201	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	1336	0.3381653517198087	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	584	0.14782078248829963	No Hit
TCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	549	0.13896166025013099	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	486	0.12301524022142743	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCA	20	7.0276594E-4	45.0	30
GTCATGT	20	7.0276594E-4	45.0	9
ACAACCG	20	7.0276594E-4	45.0	12
ATCCTCC	25	3.8861417E-5	45.0	43
CTATGTT	20	7.0276594E-4	45.0	11
CGGAATC	20	7.0276594E-4	45.0	20
CTAGACA	20	7.0276594E-4	45.0	45
AGTCCGA	35	1.2092278E-7	45.0	44
TCCATCG	20	7.0276594E-4	45.0	24
TCGCACG	25	3.8861417E-5	45.0	1
ATTAGTC	25	3.8861417E-5	45.0	31
GGTCGTT	20	7.0276594E-4	45.0	24
CGAGTTT	35	1.2092278E-7	45.0	14
AATCACG	25	3.8861417E-5	45.0	37
GTACAAG	35	1.2092278E-7	45.0	1
TTTACCG	20	7.0276594E-4	45.0	1
GCGAATA	20	7.0276594E-4	45.0	37
CCCTACC	40	6.7957444E-9	45.0	35
TCCGAAA	25	3.8861417E-5	45.0	24
GGCACGA	20	7.0276594E-4	45.0	8