FastQCFastQC Report
Sat 14 Jan 2017
SRR2935125.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935125.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences723034
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC42080.5819919948439493RNA PCR Primer, Index 7 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCT38870.5375957423855586TruSeq Adapter, Index 7 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC31210.43165328324809066Illumina PCR Primer Index 3 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC10700.14798750819463538Illumina PCR Primer Index 3 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG9780.13526334861154524No Hit
ACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC9060.12530531067695294TruSeq Adapter, Index 7 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTG8630.11935814913268256TruSeq Adapter, Index 7 (95% over 22bp)
TGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCTT7640.10566584697261816Illumina PCR Primer Index 3 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCC7610.10525092872534349No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACGG351.2110831E-745.0000042
CTAACGC551.8189894E-1245.00000429
TATCACG406.8084773E-945.01
CACGGAA207.0315483E-445.08
ACCGAAC207.0315483E-445.011
GCCGGAC207.0315483E-445.013
ATTCGTC207.0315483E-445.019
CGTTCCA207.0315483E-445.024
CGCTACA207.0315483E-445.029
CGCTAAC253.8893646E-545.037
TGCGAAG406.8084773E-945.01
TCGTCTC207.0315483E-445.031
ACTACGG453.8380676E-1045.02
TATTACG207.0315483E-445.021
CTACCGA253.8893646E-545.040
GTCCCCG207.0315483E-445.029
GACGCGA406.8084773E-945.026
GCTACGA253.8893646E-545.010
ATCGGAA253.8893646E-545.021
GCTAACG207.0315483E-445.01