Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935125.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 723034 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC | 4208 | 0.5819919948439493 | RNA PCR Primer, Index 7 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCT | 3887 | 0.5375957423855586 | TruSeq Adapter, Index 7 (95% over 24bp) |
GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC | 3121 | 0.43165328324809066 | Illumina PCR Primer Index 3 (95% over 22bp) |
TCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC | 1070 | 0.14798750819463538 | Illumina PCR Primer Index 3 (95% over 22bp) |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 978 | 0.13526334861154524 | No Hit |
ACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC | 906 | 0.12530531067695294 | TruSeq Adapter, Index 7 (95% over 23bp) |
CGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTG | 863 | 0.11935814913268256 | TruSeq Adapter, Index 7 (95% over 22bp) |
TGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCTT | 764 | 0.10566584697261816 | Illumina PCR Primer Index 3 (95% over 24bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCC | 761 | 0.10525092872534349 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAACGG | 35 | 1.2110831E-7 | 45.000004 | 2 |
CTAACGC | 55 | 1.8189894E-12 | 45.000004 | 29 |
TATCACG | 40 | 6.8084773E-9 | 45.0 | 1 |
CACGGAA | 20 | 7.0315483E-4 | 45.0 | 8 |
ACCGAAC | 20 | 7.0315483E-4 | 45.0 | 11 |
GCCGGAC | 20 | 7.0315483E-4 | 45.0 | 13 |
ATTCGTC | 20 | 7.0315483E-4 | 45.0 | 19 |
CGTTCCA | 20 | 7.0315483E-4 | 45.0 | 24 |
CGCTACA | 20 | 7.0315483E-4 | 45.0 | 29 |
CGCTAAC | 25 | 3.8893646E-5 | 45.0 | 37 |
TGCGAAG | 40 | 6.8084773E-9 | 45.0 | 1 |
TCGTCTC | 20 | 7.0315483E-4 | 45.0 | 31 |
ACTACGG | 45 | 3.8380676E-10 | 45.0 | 2 |
TATTACG | 20 | 7.0315483E-4 | 45.0 | 21 |
CTACCGA | 25 | 3.8893646E-5 | 45.0 | 40 |
GTCCCCG | 20 | 7.0315483E-4 | 45.0 | 29 |
GACGCGA | 40 | 6.8084773E-9 | 45.0 | 26 |
GCTACGA | 25 | 3.8893646E-5 | 45.0 | 10 |
ATCGGAA | 25 | 3.8893646E-5 | 45.0 | 21 |
GCTAACG | 20 | 7.0315483E-4 | 45.0 | 1 |