SRR2935121.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935121.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1493191
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	5490	0.3676689720203242	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	5257	0.3520648061768387	No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	3631	0.24317049861672085	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	3036	0.203322950647305	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	3004	0.20117988924390784	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	2286	0.1530949490051842	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACGACGT	1970	0.1319322176466373	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1631	0.10922916090439869	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1514	0.10139359264822786	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAATCG	30	2.1659398E-6	45.000004	1
TAACCGT	20	7.0339645E-4	45.000004	27
TCCGTTA	20	7.0339645E-4	45.000004	45
ATACGAG	20	7.0339645E-4	45.000004	1
GTCGAAA	25	3.8913684E-5	45.0	25
GCCGATT	45	3.8562575E-10	45.0	9
TCTAGCG	60	3.6379788E-12	41.250004	1
TACGGCT	880	0.0	40.909092	7
TTACGCG	55	6.184564E-11	40.909092	1
TACGTAG	50	1.0822987E-9	40.5	1
GTACGAG	95	0.0	40.263157	1
TAATACG	260	0.0	39.80769	4
CCGTCGA	40	3.459154E-7	39.375004	41
CGATGAA	705	0.0	38.936172	19
TTACGGG	395	0.0	38.734177	3
CGTAAGG	250	0.0	38.7	2
AGATCGT	35	6.2495437E-6	38.57143	13
GGCGATA	340	0.0	38.38235	8
TACGGGA	540	0.0	37.916664	4
CTACGGG	395	0.0	37.594936	3