SRR2935120.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935120.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474068
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	3554	0.7496814802939663	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	3234	0.6821806154391353	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2916	0.6151016309896471	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1191	0.2512297813815739	No Hit
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	996	0.21009644186066131	No Hit
ACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	917	0.19343216584962494	No Hit
AAAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	825	0.17402566720386103	No Hit
GCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	703	0.14829096247795673	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	655	0.13816583274973213	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCC	613	0.12930634423753554	No Hit
GGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	559	0.11791557329328282	No Hit
ACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	538	0.11348582903718454	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	537	0.11327488883451318	No Hit
AGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	514	0.10842326417307223	No Hit
TGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCTT	506	0.10673574255170146	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTTCG	35	1.2099008E-7	45.000004	31
ACGCCGT	35	1.2099008E-7	45.000004	25
GGTCGAG	30	2.162793E-6	45.000004	1
TCTTACG	30	2.162793E-6	45.000004	28
GCTCTAG	30	2.162793E-6	45.000004	1
TACGCCG	30	2.162793E-6	45.000004	31
TACGCAT	35	1.2099008E-7	45.000004	28
GTTGTAA	30	2.162793E-6	45.000004	29
CTAGTAG	35	1.2099008E-7	45.000004	1
TTAAGCG	35	1.2099008E-7	45.000004	1
TTGCGAC	30	2.162793E-6	45.000004	27
TTTGCGA	30	2.162793E-6	45.000004	26
CGATGCA	30	2.162793E-6	45.000004	10
CCGGTAT	35	1.2099008E-7	45.000004	26
TAGGATC	30	2.162793E-6	45.000004	34
TTGCACG	35	1.2099008E-7	45.000004	1
ATACGCA	35	1.2099008E-7	45.000004	27
TATACGC	35	1.2099008E-7	45.000004	26
GACCTGC	35	1.2099008E-7	45.000004	16
CCGTTGT	35	1.2099008E-7	45.000004	38