##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935116.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 720994 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.945622293666798 33.0 31.0 34.0 30.0 34.0 2 32.28578878603705 34.0 31.0 34.0 30.0 34.0 3 32.3289708374827 34.0 31.0 34.0 30.0 34.0 4 35.858857355262316 37.0 35.0 37.0 35.0 37.0 5 30.32536747878623 37.0 35.0 37.0 0.0 37.0 6 32.81276820611544 37.0 35.0 37.0 17.0 37.0 7 35.03034005830839 37.0 35.0 37.0 32.0 37.0 8 35.57761229635753 37.0 35.0 37.0 35.0 37.0 9 37.42277189546654 39.0 37.0 39.0 35.0 39.0 10 37.38705176464714 39.0 37.0 39.0 34.0 39.0 11 37.26402993644885 39.0 37.0 39.0 34.0 39.0 12 37.136114863646576 39.0 37.0 39.0 34.0 39.0 13 37.092350283081416 39.0 37.0 39.0 33.0 39.0 14 38.254475071914605 40.0 38.0 41.0 33.0 41.0 15 38.36371453853985 40.0 38.0 41.0 34.0 41.0 16 38.4190908662208 40.0 38.0 41.0 34.0 41.0 17 38.384169632479605 40.0 37.0 41.0 34.0 41.0 18 38.318880600948134 40.0 37.0 41.0 34.0 41.0 19 38.323321691997435 40.0 37.0 41.0 34.0 41.0 20 38.22459132808317 40.0 37.0 41.0 34.0 41.0 21 38.1859280382361 40.0 37.0 41.0 34.0 41.0 22 38.15296937283805 40.0 37.0 41.0 34.0 41.0 23 38.073824470106544 40.0 36.0 41.0 34.0 41.0 24 38.06221549693895 40.0 36.0 41.0 34.0 41.0 25 38.01378097459896 40.0 36.0 41.0 34.0 41.0 26 37.95918828728117 40.0 36.0 41.0 34.0 41.0 27 37.89881885286147 40.0 36.0 41.0 34.0 41.0 28 37.850824001309306 40.0 36.0 41.0 33.0 41.0 29 37.85389198800545 40.0 36.0 41.0 33.0 41.0 30 37.71812525485649 40.0 36.0 41.0 33.0 41.0 31 33.088147751576294 38.0 33.0 41.0 9.0 41.0 32 33.99817751604036 38.0 33.0 41.0 16.0 41.0 33 35.97940759562493 38.0 34.0 41.0 30.0 41.0 34 36.82024122253445 38.0 35.0 41.0 31.0 41.0 35 37.00207491324477 39.0 35.0 41.0 32.0 41.0 36 37.14215652280047 39.0 35.0 41.0 32.0 41.0 37 37.19470342332946 39.0 35.0 41.0 33.0 41.0 38 37.15874195901769 39.0 35.0 41.0 33.0 41.0 39 37.16890015728286 39.0 35.0 41.0 33.0 41.0 40 37.13712874170936 39.0 35.0 41.0 33.0 41.0 41 37.05361209663326 39.0 35.0 41.0 32.0 41.0 42 36.95991922262876 39.0 35.0 41.0 32.0 41.0 43 36.91153324438206 39.0 35.0 41.0 32.0 41.0 44 36.851382951869226 39.0 35.0 41.0 32.0 41.0 45 36.81441870528742 39.0 35.0 41.0 32.0 41.0 46 36.733444383725804 39.0 35.0 41.0 32.0 41.0 47 36.61039897696791 39.0 35.0 41.0 31.0 41.0 48 36.64104000865472 39.0 35.0 41.0 31.0 41.0 49 36.61345031997492 39.0 35.0 41.0 31.0 41.0 50 36.439251921652605 39.0 35.0 41.0 31.0 41.0 51 35.83655065090694 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 6.0 11 6.0 12 6.0 13 9.0 14 13.0 15 23.0 16 56.0 17 97.0 18 181.0 19 352.0 20 576.0 21 960.0 22 1555.0 23 2453.0 24 3439.0 25 4100.0 26 4773.0 27 5560.0 28 6506.0 29 8136.0 30 10552.0 31 14518.0 32 22262.0 33 26334.0 34 47267.0 35 70347.0 36 84130.0 37 82363.0 38 126184.0 39 198055.0 40 169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.67397786944136 23.547907472184235 24.35568118458683 12.422433473787576 2 32.00553680058364 25.57497011070827 23.96940889938058 18.450084189327512 3 30.940063301497656 25.57871494076234 27.075953475340985 16.40526828239902 4 28.142536553702254 26.4780289433754 26.806048316629543 18.57338618629281 5 21.17340782308868 39.560939480772376 20.994488164950056 18.271164531188884 6 26.054724449856725 32.514278898298734 24.65873502414722 16.77226162769732 7 76.23489238468004 7.044302726513674 9.979001212215358 6.741803676590928 8 75.29979445043925 6.511843371789501 10.502445235327896 7.685916942443349 9 69.47436455781879 8.699517610410073 12.707040557896459 9.119077273874678 10 37.447052263957815 28.84018452303348 19.42193693706189 14.290826275946818 11 25.746261411329357 26.303131510109658 27.168048555189085 20.7825585233719 12 23.819893092036825 22.928346144350716 31.429387761895384 21.822373001717075 13 22.03943444744339 25.350973794511468 33.07891605200598 19.530675706039162 14 17.88627922007673 28.88678685259517 30.881255599907902 22.345678327420202 15 17.238701015542432 28.10203691015459 33.68377545444206 20.975486619860913 16 19.4731162811341 29.74671079093585 30.043107154844563 20.73706577308549 17 18.68531499568651 28.475549033695145 27.2887153013756 25.55042066924274 18 18.596271258845427 27.930745609533503 30.756289234029687 22.71669389759138 19 20.564942288007945 28.74850553541361 27.81146583744109 22.875086339137358 20 21.16896950598757 30.202331780846997 27.83809574004777 20.790602973117668 21 21.30877649467263 28.510500780866415 29.58401872969817 20.596703994762784 22 19.93040163995817 26.553064241866092 28.09662771118761 25.41990640698813 23 19.295444899680163 26.973456089787156 28.968340929328125 24.76275808120456 24 20.452597386386017 26.162353639558724 29.044624504503503 24.340424469551756 25 19.212087756624882 29.225485926373867 26.633092647095534 24.929333669905713 26 17.985863960032955 28.595383595425204 28.79677223388822 24.621980210653625 27 20.3871322091446 27.972770924584673 29.73603109041129 21.904065775859436 28 17.83745773196448 28.458073160109514 29.430342000072123 24.27412710785388 29 19.00334815546315 26.018524426000774 30.9307705750672 24.04735684346888 30 20.512375969841635 26.361939211699404 30.598590279530757 22.527094538928203 31 22.505873835288504 29.316610124356096 25.87774655544984 22.29976948490556 32 22.24720316673925 27.09481632302072 26.393978313273063 24.264002196966967 33 20.65259905075493 25.108530722863158 26.834897377786778 27.40397284859513 34 18.822902825821018 24.778569585877275 30.20815707204221 26.1903705162595 35 19.153557449853952 23.630848523011288 29.455862323403526 27.759731703731237 36 19.066316779335196 25.29119521105585 29.54559954729166 26.096888462317303 37 19.876032255469532 26.027262362793586 31.337153984637872 22.759551397099003 38 20.455093939755393 26.948213161274577 25.702016937727638 26.8946759612424 39 21.57646249483352 24.04652465901242 28.12894420758009 26.24806863857397 40 20.822919469510147 21.991583841197016 31.773496034641063 25.412000654651774 41 18.0686663134506 24.0674679678333 28.61812997056841 29.245735748147695 42 19.905990895902047 22.868983653123326 29.52326926437668 27.701756186597947 43 22.05288809615614 22.797415789867877 29.780552958831834 25.369143155144148 44 20.5628618268668 23.054144694685395 28.53463413010372 27.848359348344093 45 21.023475923516703 22.37716263935622 28.475549033695145 28.12381240343193 46 22.674807279949626 22.25288976052505 29.77805640546246 25.294246554062866 47 18.058818797382504 23.148875025312275 33.23869546764605 25.553610709659164 48 18.64661841846118 21.591441815049777 31.820375759021573 27.941564007467466 49 20.65939522381601 20.493235727343084 32.93050982393751 25.916859224903398 50 19.345514664477097 20.1122339436944 32.4371631386669 28.105088253161608 51 18.577547108575107 19.998363370568963 29.30260168600571 32.12148783485022 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1707.0 1 1778.5 2 1850.0 3 1951.0 4 2052.0 5 1822.0 6 1592.0 7 1752.0 8 1912.0 9 2116.0 10 2320.0 11 2436.5 12 2553.0 13 2626.0 14 2699.0 15 2746.5 16 2794.0 17 2699.0 18 2604.0 19 2830.5 20 3057.0 21 3072.5 22 3088.0 23 3224.5 24 3361.0 25 3394.5 26 5034.5 27 6641.0 28 7175.0 29 7709.0 30 9234.0 31 10759.0 32 11228.0 33 11697.0 34 12964.0 35 14231.0 36 16693.5 37 19156.0 38 21187.5 39 23219.0 40 26264.5 41 29310.0 42 34803.0 43 40296.0 44 47270.5 45 54245.0 46 64192.5 47 74140.0 48 83535.0 49 92930.0 50 88969.5 51 85009.0 52 71604.5 53 58200.0 54 48489.0 55 38778.0 56 33621.5 57 28465.0 58 26223.5 59 23982.0 60 21514.5 61 19047.0 62 16818.5 63 14590.0 64 12884.5 65 11179.0 66 9195.5 67 7212.0 68 6275.0 69 5338.0 70 4507.0 71 3676.0 72 3281.5 73 2887.0 74 2291.0 75 1257.5 76 820.0 77 609.5 78 399.0 79 281.5 80 164.0 81 145.5 82 127.0 83 81.5 84 36.0 85 36.0 86 36.0 87 20.0 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 720994.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.609525461241365 #Duplication Level Percentage of deduplicated Percentage of total 1 67.70316673871498 18.69252305879221 2 13.546962184285128 7.480503946989884 3 5.793803170503813 4.798924684603379 4 3.0960230171306975 3.4191890528023725 5 1.865347491747351 2.57506795337306 6 1.2080573296799992 2.0012333761463514 7 0.8113787112858662 1.568124683156943 8 0.5589327806596911 1.2345495070996941 9 0.4043777540716962 1.0048210107301885 >10 3.614945804329908 24.241999986829228 >50 1.2796773010043672 23.491571592471537 >100 0.10467472754282874 4.920020104375018 >500 0.0069016303874392575 1.3240100577807548 >1k 0.005751358656199381 3.2474609848493903 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT 4598 0.6377306884662008 TruSeq Adapter, Index 22 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 3952 0.5481321619874784 TruSeq Adapter, Index 20 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 3567 0.49473365936471037 TruSeq Adapter, Index 20 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 1410 0.19556334726779975 TruSeq Adapter, Index 20 (95% over 22bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1375 0.19070893793845717 No Hit ACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 1252 0.17364915658105337 TruSeq Adapter, Index 22 (95% over 21bp) TGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCTT 1189 0.1649112197882368 TruSeq Adapter, Index 20 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCC 1046 0.14507749024263725 No Hit AAAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTC 1041 0.1443840031955883 No Hit CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 1021 0.14161005500739257 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 934 0.1295433803887411 No Hit ACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 895 0.12413418142175942 No Hit GCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 858 0.11900237727359728 TruSeq Adapter, Index 20 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 847 0.11747670577008963 TruSeq Adapter, Index 20 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 822 0.11400927053484494 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6650540781199289 0.0 2 0.0 0.0 0.0 2.1481454769387818 0.0 3 0.0 0.0 0.0 3.08074685781019 0.0 4 0.0 0.0 0.0 4.059118383786828 0.0 5 0.0 0.0 0.0 6.550401251605423 0.0 6 0.0 0.0 0.0 8.144589275361515 0.0 7 0.0 0.0 0.0 9.518941905203095 0.0 8 0.0 0.0 0.0 11.694688166614425 0.0 9 0.0 0.0 0.0 12.482905544290244 0.0 10 0.0 0.0 0.0 14.079867516234533 0.0 11 0.0 0.0 0.0 16.53564384724422 0.0 12 0.0 0.0 0.0 18.427892603821945 0.0 13 0.0 0.0 0.0 19.20709464988613 0.0 14 0.0 0.0 0.0 19.5369170894626 0.0 15 0.0 0.0 0.0 20.124439315722462 0.0 16 0.0 0.0 0.0 21.262174165110945 0.0 17 0.0 0.0 0.0 22.523904498511776 0.0 18 0.0 0.0 0.0 23.96053226517835 0.0 19 1.3869740940978704E-4 0.0 0.0 24.896184989056774 0.0 20 1.3869740940978704E-4 0.0 0.0 25.685373248598463 0.0 21 1.3869740940978704E-4 0.0 0.0 26.642107978707173 0.0 22 1.3869740940978704E-4 0.0 0.0 27.515069473532375 0.0 23 2.773948188195741E-4 0.0 0.0 28.32533973930435 0.0 24 2.773948188195741E-4 0.0 0.0 28.99566431898185 0.0 25 2.773948188195741E-4 0.0 0.0 29.585683098611085 0.0 26 2.773948188195741E-4 0.0 0.0 30.09789263156143 0.0 27 2.773948188195741E-4 0.0 0.0 30.620504470217504 0.0 28 2.773948188195741E-4 0.0 0.0 31.153796009398135 0.0 29 2.773948188195741E-4 0.0 0.0 31.793884553824302 0.0 30 2.773948188195741E-4 0.0 0.0 32.468647450602916 0.0 31 2.773948188195741E-4 0.0 0.0 33.04285472555944 0.0 32 2.773948188195741E-4 0.0 0.0 33.6403631652968 0.0 33 2.773948188195741E-4 0.0 0.0 34.22608232523433 0.0 34 2.773948188195741E-4 0.0 0.0 34.836489624046806 0.0 35 2.773948188195741E-4 0.0 0.0 35.447590409906326 0.0 36 2.773948188195741E-4 0.0 0.0 36.011672773975924 0.0 37 2.773948188195741E-4 0.0 0.0 36.613064741176764 0.0 38 2.773948188195741E-4 0.0 0.0 37.1989225985237 0.0 39 2.773948188195741E-4 0.0 0.0 37.811549055886736 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCCGAT 140 0.0 45.000004 8 GCCGATT 30 2.1643718E-6 45.000004 9 TACGACG 35 1.2110831E-7 45.000004 1 TTCATCG 30 2.1643718E-6 45.000004 15 ATCGACA 30 2.1643718E-6 45.000004 18 AAATGCG 35 1.2110831E-7 45.000004 1 CGGAATT 20 7.0315355E-4 45.0 34 AGCAATC 20 7.0315355E-4 45.0 21 TCGTTGC 25 3.8893544E-5 45.0 43 CTCACGG 50 2.1827873E-11 45.0 2 CTGTACG 25 3.8893544E-5 45.0 1 ATAGGCC 20 7.0315355E-4 45.0 3 TCCGATC 20 7.0315355E-4 45.0 14 CTATCCG 20 7.0315355E-4 45.0 12 ACGCAAT 20 7.0315355E-4 45.0 33 GACGTAT 20 7.0315355E-4 45.0 9 CCTACGC 20 7.0315355E-4 45.0 28 TACGGTG 20 7.0315355E-4 45.0 1 CGCGAAT 20 7.0315355E-4 45.0 10 GCCGATC 25 3.8893544E-5 45.0 9 >>END_MODULE