##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935115.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 560104 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.84251139074172 33.0 31.0 34.0 30.0 34.0 2 32.15548540985245 34.0 31.0 34.0 30.0 34.0 3 32.21970919686344 34.0 31.0 34.0 30.0 34.0 4 35.77084077242798 37.0 35.0 37.0 35.0 37.0 5 30.334762829760187 37.0 35.0 37.0 0.0 37.0 6 32.776064802251014 37.0 35.0 37.0 17.0 37.0 7 34.922819690628884 37.0 35.0 37.0 32.0 37.0 8 35.47560274520446 37.0 35.0 37.0 33.0 37.0 9 37.28805186179709 39.0 37.0 39.0 34.0 39.0 10 37.23754338479996 39.0 37.0 39.0 34.0 39.0 11 37.13550340651022 39.0 37.0 39.0 34.0 39.0 12 36.934362189879025 39.0 37.0 39.0 33.0 39.0 13 36.87304322054476 39.0 37.0 39.0 33.0 39.0 14 38.006834445031636 40.0 37.0 41.0 33.0 41.0 15 38.11783347378344 40.0 37.0 41.0 33.0 41.0 16 38.192026837872966 40.0 37.0 41.0 34.0 41.0 17 38.15927399197292 40.0 37.0 41.0 34.0 41.0 18 38.08492172882179 40.0 37.0 41.0 34.0 41.0 19 38.03964442317855 40.0 36.0 41.0 34.0 41.0 20 37.949995000928396 40.0 36.0 41.0 34.0 41.0 21 37.89613178981046 40.0 36.0 41.0 33.0 41.0 22 37.83412366274835 40.0 36.0 41.0 33.0 41.0 23 37.78891955779641 39.0 36.0 41.0 33.0 41.0 24 37.75193714024538 39.0 36.0 41.0 33.0 41.0 25 37.6925678088355 39.0 35.0 41.0 33.0 41.0 26 37.63479818033794 39.0 35.0 41.0 33.0 41.0 27 37.589160227386344 39.0 35.0 41.0 33.0 41.0 28 37.51321897361918 39.0 35.0 41.0 33.0 41.0 29 37.45984852813049 39.0 35.0 41.0 33.0 41.0 30 37.29314555868196 39.0 35.0 41.0 33.0 41.0 31 32.799665776355816 38.0 33.0 40.0 9.0 41.0 32 33.60398247468327 38.0 33.0 40.0 16.0 41.0 33 35.43739019896305 38.0 33.0 40.0 27.0 41.0 34 36.30440418208047 38.0 35.0 40.0 30.0 41.0 35 36.41872045191607 39.0 35.0 40.0 31.0 41.0 36 36.61397883250253 39.0 35.0 40.0 31.0 41.0 37 36.67409623926985 39.0 35.0 41.0 31.0 41.0 38 36.58663748161056 39.0 35.0 41.0 31.0 41.0 39 36.585050276377245 39.0 35.0 41.0 31.0 41.0 40 36.53392048619542 39.0 35.0 41.0 31.0 41.0 41 36.49467420336223 39.0 35.0 41.0 31.0 41.0 42 36.42507284361476 39.0 35.0 41.0 31.0 41.0 43 36.38761908502707 39.0 35.0 41.0 31.0 41.0 44 36.29633068144487 39.0 35.0 41.0 30.0 41.0 45 36.26127112107751 39.0 35.0 41.0 30.0 41.0 46 36.2061420736149 39.0 35.0 41.0 30.0 41.0 47 36.11626947852542 39.0 35.0 40.0 30.0 41.0 48 36.13388406438804 39.0 35.0 40.0 30.0 41.0 49 36.1189386256838 39.0 35.0 40.0 30.0 41.0 50 35.939932583948696 39.0 35.0 40.0 30.0 41.0 51 35.324943224829674 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 4.0 10 5.0 11 1.0 12 6.0 13 11.0 14 11.0 15 27.0 16 44.0 17 112.0 18 215.0 19 380.0 20 669.0 21 1043.0 22 1668.0 23 2659.0 24 3655.0 25 4249.0 26 4701.0 27 5315.0 28 6180.0 29 7522.0 30 9427.0 31 13245.0 32 19575.0 33 22608.0 34 40045.0 35 57147.0 36 63848.0 37 63069.0 38 99114.0 39 133463.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.934704983360234 23.35905474697556 22.676145858626253 11.03009441103795 2 29.901946781312045 25.872337994372472 24.389042035050636 19.83667318926485 3 31.40863125419565 26.784311485009926 25.503835002071046 16.30322225872338 4 28.948552411694973 28.255466841872224 24.31405596103581 18.481924785397 5 21.097689000614174 40.4996214988645 20.362646936997415 18.04004256352392 6 25.12586948138203 34.44271063945267 24.47331209918158 15.958107779983719 7 73.70166968991472 9.158834787825118 10.301122648650965 6.838372873609187 8 72.50689157727851 7.575914473026438 11.459300415637095 8.45789353405796 9 67.41533715167182 9.898518846499936 13.797080542185022 8.889063459643209 10 38.21093939696914 25.385464128090497 21.046448516704043 15.357147958236329 11 27.93052718780798 27.441689400539897 23.725772356562352 20.90201105508977 12 23.779869452815905 25.166219130732863 31.101545427277795 19.95236598917344 13 22.271578135489122 28.35955465413566 31.282047619727766 18.08681959064745 14 18.491387313784582 31.027630582891746 29.535050633453785 20.94593146986988 15 16.824554011397883 29.87409481096368 33.59108308457001 19.710268093068432 16 19.081456300972675 28.450966249125166 31.478261180066557 20.9893162698356 17 18.188229328838933 28.383300244240356 27.27279219573508 26.155678231185636 18 19.95343721880222 28.76305114764401 29.79339551226201 21.49011612129176 19 20.75025352434548 29.831424164083813 26.655942467827405 22.762379843743304 20 20.31640552468827 30.518260894405323 28.143523345664377 21.02181023524203 21 20.95414423035722 31.15814205933184 28.592904174938937 19.294809535372 22 18.89988287889392 27.422942882036196 27.433655178324024 26.24351906074586 23 18.164483738734237 28.25011069372831 28.27421336037593 25.311192207161525 24 20.729721623127134 27.1417451044806 27.47079113878851 24.65774213360376 25 17.984517161098655 30.992637081684833 25.0 26.022845757216515 26 18.525309585362717 29.493451216202704 27.11139359833174 24.86984560010284 27 21.98395298016083 28.647715424278346 27.70824703983546 21.660084555725366 28 18.974511876365817 28.606473083570194 27.561310042420693 24.857704997643296 29 17.709568223044293 28.941232342564955 27.172632225443845 26.17656720894691 30 20.578142630654305 29.57861397169097 27.18602259580364 22.657220801851086 31 24.160691585848344 30.64823675603102 21.634196506363104 23.55687515175753 32 19.006827303500778 33.72409409681059 22.25479553797152 25.01428306171711 33 18.87738705668947 32.525031065659235 23.885742647793982 24.71183922985731 34 19.196256409523947 27.97676860011712 24.906267407481465 27.920707582877462 35 16.37963663890992 31.045662948309598 24.490987388056503 28.083713024723977 36 20.418886492508534 28.054968363018297 25.74396897718995 25.782176167283215 37 19.524231214203077 28.45935754788396 28.11977775555968 23.896633482353277 38 19.511554996929142 32.34488594975219 24.238891348749515 23.904667704569153 39 20.91593704026395 28.26957136531787 24.99678631111365 25.81770528330453 40 20.963963835287732 26.250124976790023 27.54024252638796 25.24566866153429 41 18.48960193106994 27.039085598388873 24.769685629811605 29.701626840729578 42 21.066266264836532 23.737912959021894 27.29582363275392 27.899997143387655 43 22.992515675660236 24.44135374858955 27.239584077242796 25.32654649850742 44 20.61938497136246 25.68130204390613 26.177638438575695 27.521674546155715 45 19.682951737534456 24.429213146130007 27.45740076842872 28.430434347906818 46 22.61222915744219 25.047312641937925 27.73467070401211 24.60578749660777 47 17.415694228214758 24.78414722980018 31.051197634724982 26.748960907260077 48 18.778298316027023 23.051433305243314 29.369367117535315 28.80090126119435 49 20.698477425620958 21.36656763743876 31.665904903375086 26.269050033565193 50 19.35176324396898 21.233913701741105 31.24223358519132 28.172089469098594 51 18.072536528930343 22.06108151343322 27.45418707954237 32.41219487809407 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2217.0 1 2016.5 2 1816.0 3 1874.5 4 1933.0 5 1706.0 6 1479.0 7 1620.0 8 1761.0 9 2001.5 10 2242.0 11 2330.5 12 2419.0 13 2626.5 14 2834.0 15 2776.5 16 2719.0 17 2731.5 18 2744.0 19 2706.0 20 2668.0 21 2321.5 22 1975.0 23 1953.0 24 1931.0 25 2629.0 26 3168.0 27 3009.0 28 3744.0 29 4479.0 30 4339.0 31 4199.0 32 5465.0 33 6731.0 34 8562.5 35 10394.0 36 11662.5 37 12931.0 38 14498.0 39 16065.0 40 18518.0 41 20971.0 42 24815.5 43 28660.0 44 35757.0 45 42854.0 46 52847.0 47 62840.0 48 71435.5 49 80031.0 50 77813.5 51 75596.0 52 61988.5 53 48381.0 54 39326.0 55 30271.0 56 26733.5 57 23196.0 58 19563.5 59 15931.0 60 14357.5 61 12784.0 62 11315.5 63 9847.0 64 8326.0 65 6805.0 66 5705.0 67 4605.0 68 3590.5 69 2576.0 70 2307.5 71 2039.0 72 1465.5 73 892.0 74 983.0 75 690.0 76 306.0 77 238.5 78 171.0 79 229.5 80 288.0 81 196.5 82 105.0 83 56.0 84 7.0 85 4.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 560104.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.471882727692293 #Duplication Level Percentage of deduplicated Percentage of total 1 68.86219975361517 20.294986755094673 2 12.723008433213048 7.499420249741901 3 5.700310700123975 5.0399666539639 4 3.0575935230033346 3.604521509556232 5 1.8465770533100268 2.7211051181400356 6 1.2703955090223125 2.246456847581553 7 0.8253849276808843 1.7027953455671065 8 0.6136530465681944 1.4468408499159138 9 0.46830829193274925 1.2421734354223086 >10 3.5540235350260616 24.39584744431088 >50 0.9556380239961267 18.70494038437922 >100 0.10909740447354625 5.536634677725374 >500 0.00759538891904436 1.6119264631257648 >1k 0.00621440911558175 3.952384265475143 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGCT 4263 0.761108651250482 TruSeq Adapter, Index 13 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC 4044 0.7220087697998944 TruSeq Adapter, Index 19 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC 3161 0.5643594760972962 TruSeq Adapter, Index 19 (95% over 23bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1877 0.3351163355376858 No Hit AAAACTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTC 1356 0.24209789610500904 No Hit ACTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC 1251 0.22335137760130264 TruSeq Adapter, Index 13 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC 1220 0.21781669118592262 TruSeq Adapter, Index 19 (95% over 23bp) GCTGCAGGGAAAAGATGGGCATTCAGAGAGAAACAGCAAGACCTTCAGCCT 1215 0.21692399982860328 No Hit TGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGCTT 1035 0.18478711096510647 TruSeq Adapter, Index 19 (96% over 25bp) GCCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTG 979 0.17478896776312972 TruSeq Adapter, Index 19 (95% over 22bp) TTATTTGGGTCTGAGTTCGAGGCCAGCCTGATTGACAAAGTGAGTTTCAGG 879 0.1569351406167426 No Hit GGCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTG 757 0.13515347149815035 TruSeq Adapter, Index 19 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCC 756 0.13497493322668647 No Hit CGCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTG 714 0.12747632582520388 TruSeq Adapter, Index 13 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTG 713 0.12729778755374002 TruSeq Adapter, Index 13 (95% over 22bp) GCAGAGGCAGGTGGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAGAGTGA 683 0.12194163940982389 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTT 656 0.11712110608029937 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTC 648 0.1156927999085884 No Hit ACCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTG 609 0.10872980732149745 TruSeq Adapter, Index 13 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8116349820747576 0.0 2 0.0 0.0 0.0 2.6595060917258224 0.0 3 0.0 0.0 0.0 3.7578735377715566 0.0 4 0.0 0.0 0.0 4.951937497321926 0.0 5 0.0 0.0 0.0 7.841043806150286 0.0 6 0.0 0.0 0.0 9.725693799722908 0.0 7 0.0 0.0 0.0 11.225772356562352 0.0 8 0.0 0.0 0.0 13.752088897776128 0.0 9 0.0 0.0 0.0 14.551226200848413 0.0 10 0.0 0.0 0.0 16.260551611843514 0.0 11 0.0 0.0 0.0 18.949159441817947 0.0 12 0.0 0.0 0.0 20.967177524174083 0.0 13 0.0 0.0 0.0 21.813984545727223 0.0 14 0.0 0.0 0.0 22.15784925656664 0.0 15 0.0 0.0 0.0 22.768450144973077 0.0 16 1.78538271463871E-4 0.0 0.0 24.04856955136903 0.0 17 1.78538271463871E-4 0.0 0.0 25.58399868595832 0.0 18 1.78538271463871E-4 0.0 0.0 27.302251010526618 0.0 19 1.78538271463871E-4 0.0 0.0 28.32902460971534 0.0 20 1.78538271463871E-4 0.0 0.0 29.212610515190036 0.0 21 1.78538271463871E-4 0.0 0.0 30.12922600088555 0.0 22 1.78538271463871E-4 0.0 0.0 31.124576864296632 0.0 23 3.57076542927742E-4 0.0 0.0 32.03262251296188 0.0 24 3.57076542927742E-4 0.0 0.0 32.75820204819105 0.0 25 3.57076542927742E-4 0.0 0.0 33.420579035322014 0.0 26 5.35614814391613E-4 0.0 0.0 34.025288160770145 0.0 27 5.35614814391613E-4 0.0 0.0 34.56286689614786 0.0 28 5.35614814391613E-4 0.0 0.0 35.14882950309228 0.0 29 5.35614814391613E-4 0.0 0.0 35.80906403096568 0.0 30 5.35614814391613E-4 0.0 0.0 36.4632282576093 0.0 31 7.14153085855484E-4 0.0 0.0 37.08882636081871 0.0 32 7.14153085855484E-4 0.0 0.0 37.72656506648765 0.0 33 7.14153085855484E-4 0.0 0.0 38.376087298073216 0.0 34 7.14153085855484E-4 0.0 0.0 38.963299672917884 0.0 35 7.14153085855484E-4 0.0 0.0 39.61246482796052 0.0 36 7.14153085855484E-4 0.0 0.0 40.23199262994015 0.0 37 7.14153085855484E-4 0.0 0.0 40.857412194878094 0.0 38 7.14153085855484E-4 0.0 0.0 41.4617642437833 0.0 39 7.14153085855484E-4 0.0 0.0 42.06361675688801 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 35 1.2104283E-7 45.000004 1 AATCACG 30 2.1635005E-6 45.000004 1 ACCATAC 30 2.1635005E-6 45.000004 16 GACGTAT 30 2.1635005E-6 45.000004 2 ATTACGC 30 2.1635005E-6 45.000004 40 CGCGCAT 70 0.0 45.000004 36 GTCTACG 45 3.8380676E-10 45.000004 1 CCGCTTG 35 1.2104283E-7 45.000004 39 CCTCGAA 35 1.2104283E-7 45.000004 20 GGACGTA 30 2.1635005E-6 45.000004 1 CTCGCGC 45 3.8380676E-10 45.000004 33 GTATCAA 35 1.2104283E-7 45.000004 9 ACGTATT 30 2.1635005E-6 45.000004 3 GCGCTCC 30 2.1635005E-6 45.000004 36 TTCGCCG 35 1.2104283E-7 45.000004 35 TAGTCTC 45 3.8380676E-10 45.000004 29 ACGAAAG 35 1.2104283E-7 45.000004 1 ACGCGCA 70 0.0 45.000004 35 CGGACAT 25 3.8882357E-5 45.0 21 AACGTTA 20 7.030187E-4 45.0 23 >>END_MODULE