SRR2935114.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935114.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2230711
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17837	0.7996105277644661	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTT	7883	0.35338508663829604	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	7111	0.3187772867036564	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCT	4165	0.18671177037276457	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	3580	0.16048694788343268	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	2933	0.13148274249779554	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	2752	0.12336873759083986	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCC	2575	0.11543404770945227	No Hit
CGTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCT	2434	0.10911319305817742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATT	2005	0.0	43.653366	1
CGTTTTT	12400	0.0	43.493954	1
CACGCGA	30	1.1402662E-4	37.500004	32
CGTTATC	145	0.0	37.24138	1
ACGGGTA	415	0.0	36.86747	5
CGAATAT	135	0.0	36.666664	14
AATACGG	270	0.0	36.666664	2
TAACGGG	695	0.0	36.582733	3
GCGTAAG	185	0.0	36.486485	1
GTATACG	105	0.0	36.42857	1
CGTTTCT	935	0.0	35.855614	1
TCTAGCG	95	0.0	35.526314	1
TACGGGA	1155	0.0	35.259743	4
CGTTCTG	940	0.0	35.18617	1
TAAGTCG	45	8.70481E-7	35.000004	1
GTTATTT	2565	0.0	35.0	2
CGTTAGG	240	0.0	34.687504	2
TAAGGGA	2385	0.0	34.62264	4
GCGTTAG	130	0.0	34.615387	1
CTTACGC	85	0.0	34.411762	29