SRR2935110.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935110.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	997001
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT	6923	0.6943824529764765	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	5895	0.5912732284120076	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	4926	0.49408175117176417	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	2182	0.2188563501942325	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC	1892	0.1897691175836333	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1808	0.1813438502067701	No Hit
ACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	1715	0.17201587561095727	TruSeq Adapter, Index 22 (95% over 21bp)
TGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCTT	1312	0.13159465236243495	TruSeq Adapter, Index 20 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG	1271	0.12748231947610886	No Hit
GCCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG	1118	0.11213629675396514	TruSeq Adapter, Index 20 (95% over 21bp)
AAAACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC	1091	0.10942817509711625	No Hit
GGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG	1007	0.10100290772025304	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTA	20	7.032835E-4	45.000004	34
ATATGCG	40	6.8139343E-9	45.000004	1
CATAGGT	20	7.032835E-4	45.000004	19
CTAAACG	20	7.032835E-4	45.000004	1
AACGCAC	75	0.0	45.000004	31
TGCCTCG	20	7.032835E-4	45.000004	29
GTTCACG	20	7.032835E-4	45.000004	1
AACCTCG	20	7.032835E-4	45.000004	17
ACCGTGC	20	7.032835E-4	45.000004	24
GCGCTAC	20	7.032835E-4	45.000004	37
CCGTTAT	20	7.032835E-4	45.000004	18
GTACGAC	20	7.032835E-4	45.000004	16
TCGCAAT	25	3.8904334E-5	45.0	21
GTCGATG	35	1.2117198E-7	45.0	1
CGAAACG	25	3.8904334E-5	45.0	2
GTTTACG	25	3.8904334E-5	45.0	1
CGCATAC	25	3.8904334E-5	45.0	37
ATTACGC	25	3.8904334E-5	45.0	12
TAACGTG	25	3.8904334E-5	45.0	42
GTCCGTT	25	3.8904334E-5	45.0	41