SRR2935109.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935109.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2232268
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	8465	0.3792107399290766	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	6848	0.30677320106725536	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	6402	0.286793521208027	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	6302	0.28231377236066635	Illumina Single End Adapter 1 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	4716	0.21126495564152692	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	2419	0.10836512461765344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTA	20	7.034717E-4	45.0	23
AATTTCG	20	7.034717E-4	45.0	21
CTATCGA	25	3.891992E-5	45.0	28
CGCAATA	35	1.2126111E-7	45.0	14
CCAACGG	105	0.0	42.857143	2
ACGGGTA	275	0.0	40.909092	5
CGTAAGG	365	0.0	40.684933	2
CGTTGTA	95	0.0	40.263153	29
TACCGTA	40	3.4601726E-7	39.375	43
CGTTAGG	255	0.0	38.82353	2
ACGTTAG	35	6.2509353E-6	38.571426	1
CGTTAGT	35	6.2509353E-6	38.571426	30
GCGTTAG	160	0.0	37.96875	1
TAGCACG	95	0.0	37.894733	1
ACTTGAC	1060	0.0	37.78302	6
CCGTAAA	30	1.1402663E-4	37.500004	13
TGCATTA	865	0.0	37.456646	15
CACGGGA	705	0.0	37.340424	4
ATAACGG	255	0.0	37.058823	2
CTACGGG	675	0.0	37.000004	3