SRR2935108.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935108.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1935765
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	6173	0.31889201426826086	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	5736	0.29631695996156554	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	5377	0.2777713203823811	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	4146	0.21417889051615252	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG	3703	0.19129388123041796	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	2760	0.14257929035807548	No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	2238	0.11561320718165685	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAT	20	7.0344826E-4	45.000004	18
AACGATC	20	7.0344826E-4	45.000004	26
TCGTTAC	35	1.212502E-7	45.0	20
ATATGCG	35	1.212502E-7	45.0	1
CAACACG	25	3.891799E-5	45.0	40
TCCCGTA	25	3.891799E-5	45.0	18
CTGTCGT	55	6.184564E-11	40.90909	17
ACGCTTA	50	1.0822987E-9	40.5	17
GTCGTGA	45	1.929402E-8	40.0	25
TACGACG	80	0.0	39.375004	1
TCGACGT	40	3.4598634E-7	39.375004	26
TATACGG	200	0.0	39.375	2
TACGGGA	755	0.0	39.33775	4
TCACGAG	35	6.250506E-6	38.571426	23
GCGATAT	70	0.0	38.571426	9
CATACGA	305	0.0	37.622948	18
GCGCGAT	30	1.14021044E-4	37.500004	22
CCTACGG	30	1.14021044E-4	37.500004	2
TGCGCAA	30	1.14021044E-4	37.500004	1
GATTCGT	30	1.14021044E-4	37.500004	26