SRR2935107.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935107.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2105275
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	31789	1.509969006424339	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	29323	1.3928346653050077	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	20639	0.9803469855482062	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGCTGAT	10331	0.4907197397014642	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	8344	0.3963377706000404	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	6065	0.2880858795169277	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	5718	0.2716034722304687	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	5344	0.25383857215803163	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTC	5249	0.2493260975407013	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTA	5091	0.24182113975608888	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	4669	0.22177625250857963	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	3900	0.18524895797461138	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2812	0.1335692486729762	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCC	2178	0.10345441806889837	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACT	20	7.034626E-4	45.0	21
ACACGAA	25	3.8919163E-5	45.0	31
CTACCGT	25	3.8919163E-5	45.0	36
CGTACAA	20	7.034626E-4	45.0	30
CGGTCGA	20	7.034626E-4	45.0	13
TCGAATA	40	6.8193913E-9	45.0	44
CGATCGA	290	0.0	42.672413	41
GCTAACG	90	0.0	42.5	1
TAATACG	1150	0.0	42.45652	4
TACGGCT	4385	0.0	41.92132	7
TTGCACG	180	0.0	41.25	1
AATACGG	1190	0.0	41.02941	5
CTAACGC	315	0.0	40.714283	29
ACGGGTA	255	0.0	40.588234	5
ATAATAC	1820	0.0	40.54945	3
TCTAACG	315	0.0	39.999996	28
CGTAAGG	220	0.0	39.886368	2
ACGGCTG	4645	0.0	39.865444	8
TAGGTCG	85	0.0	39.705883	1
CGGTCTA	85	0.0	39.705883	31