##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935105.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1794065 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00532366441573 33.0 31.0 34.0 30.0 34.0 2 32.326458071474555 34.0 31.0 34.0 30.0 34.0 3 32.385169991053836 34.0 31.0 34.0 30.0 34.0 4 35.90790913372704 37.0 35.0 37.0 35.0 37.0 5 30.410940517762736 37.0 35.0 37.0 0.0 37.0 6 32.87088371937472 37.0 35.0 37.0 17.0 37.0 7 35.069136291048544 37.0 35.0 37.0 32.0 37.0 8 35.62479564564271 37.0 35.0 37.0 35.0 37.0 9 37.48871194744895 39.0 37.0 39.0 35.0 39.0 10 37.39450298623517 39.0 37.0 39.0 35.0 39.0 11 37.25352202958087 39.0 37.0 39.0 34.0 39.0 12 37.12347545936184 39.0 37.0 39.0 34.0 39.0 13 37.08717465643664 39.0 37.0 39.0 33.0 39.0 14 38.25022560498087 40.0 38.0 41.0 33.0 41.0 15 38.35343591229972 40.0 38.0 41.0 34.0 41.0 16 38.43573727819226 40.0 38.0 41.0 34.0 41.0 17 38.411764902609434 40.0 37.0 41.0 34.0 41.0 18 38.375644695147614 40.0 37.0 41.0 34.0 41.0 19 38.369293754685586 40.0 37.0 41.0 34.0 41.0 20 38.29008425001324 40.0 37.0 41.0 34.0 41.0 21 38.24634447469852 40.0 37.0 41.0 34.0 41.0 22 38.243729184840014 40.0 37.0 41.0 34.0 41.0 23 38.16392995794467 40.0 37.0 41.0 34.0 41.0 24 38.13981767661707 40.0 37.0 41.0 34.0 41.0 25 38.087327939623144 40.0 37.0 41.0 34.0 41.0 26 38.023545969627634 40.0 36.0 41.0 34.0 41.0 27 37.98319570361163 40.0 36.0 41.0 34.0 41.0 28 37.92588953020097 40.0 36.0 41.0 34.0 41.0 29 37.90921120472224 40.0 36.0 41.0 34.0 41.0 30 37.78137024020869 40.0 36.0 41.0 33.0 41.0 31 33.221805230022326 39.0 33.0 41.0 9.0 41.0 32 34.0845259229738 38.0 33.0 41.0 16.0 41.0 33 36.02377450092388 38.0 34.0 41.0 30.0 41.0 34 36.88351982787692 38.0 35.0 41.0 31.0 41.0 35 37.02771025575996 39.0 35.0 41.0 32.0 41.0 36 37.203111927382785 39.0 35.0 41.0 32.0 41.0 37 37.3318246551825 39.0 35.0 41.0 33.0 41.0 38 37.27814042412064 39.0 35.0 41.0 33.0 41.0 39 37.27544208264472 39.0 35.0 41.0 33.0 41.0 40 37.22837968523994 39.0 35.0 41.0 33.0 41.0 41 37.17479689977788 39.0 35.0 41.0 33.0 41.0 42 37.10545604534953 39.0 35.0 41.0 32.0 41.0 43 37.10683949578193 39.0 35.0 41.0 32.0 41.0 44 37.05356662105331 39.0 35.0 41.0 32.0 41.0 45 37.01886943895567 39.0 35.0 41.0 32.0 41.0 46 36.95486562638477 39.0 35.0 41.0 32.0 41.0 47 36.85416916332463 39.0 35.0 41.0 32.0 41.0 48 36.8449587946925 39.0 35.0 41.0 32.0 41.0 49 36.84077499979098 39.0 35.0 41.0 32.0 41.0 50 36.661324422470756 39.0 35.0 41.0 32.0 41.0 51 36.04026721439859 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 10.0 10 16.0 11 8.0 12 14.0 13 30.0 14 40.0 15 49.0 16 75.0 17 171.0 18 303.0 19 607.0 20 1036.0 21 1656.0 22 2846.0 23 4369.0 24 6153.0 25 8116.0 26 10045.0 27 12509.0 28 15303.0 29 19423.0 30 26085.0 31 36629.0 32 56544.0 33 66449.0 34 120557.0 35 173444.0 36 212220.0 37 209848.0 38 317167.0 39 491924.0 40 417.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.890789910064576 21.570623137957654 25.03231488268262 11.506272069295148 2 31.871977882629672 24.59386922993314 25.29702101094442 18.237131876492768 3 32.17469824114511 24.76052985817125 25.593219866615758 17.471552034067887 4 28.548965617187783 25.47588855476251 26.380649530535404 19.594496297514304 5 22.424103920426518 39.31206505895829 20.557783580862456 17.70604743975274 6 26.860620991993045 34.04659251476396 23.376912207751673 15.71587428549133 7 79.29656952228599 6.2905747562100585 8.94220666475295 5.47064905675101 8 79.55620337055792 5.6181910911812 8.605262351141125 6.220343187119753 9 73.50725865562285 7.318965589318113 11.015654393792868 8.158121361266176 10 42.312346542628056 23.702652913913376 18.17269719881944 15.812303344639131 11 30.307876247516113 25.989415099229962 24.139370647105874 19.563338006148047 12 27.846036793538698 22.584020088458335 28.852354847789798 20.717588270213174 13 25.317756045628226 23.75131335821166 30.456588808097813 20.474341788062304 14 20.53426157915126 28.103218110826532 28.89343474177357 22.46908556824864 15 19.27811980056464 26.46593072157363 33.50413725255216 20.751812225309564 16 21.889786601934713 25.634021063896796 30.42849618046169 22.047696153706806 17 21.476423652431766 26.037127974738933 27.975630760312477 24.510817612516828 18 21.731431135438235 26.039357548360847 29.54469319673479 22.68451811946613 19 23.074972200003902 27.089263766920375 27.726810344106816 22.108953688968906 20 25.264859411448302 26.770323260305506 27.935442695777468 20.029374632468723 21 23.991884352016232 27.33680217829343 28.09123415260874 20.5800793170816 22 21.93761095612478 25.0928478065176 27.514164759916724 25.455376477440893 23 21.55590795205302 26.664864427988956 28.136160061090315 23.64306755886771 24 22.338878468728836 24.75423131268934 28.841597155064058 24.065293063517764 25 21.18407081125823 27.30670293439758 26.463812626632816 25.045413627711373 26 20.842723089743124 27.152026264377266 27.363557061756406 24.641693584123207 27 22.020997009584377 26.60600368437041 27.793641813423704 23.579357492621504 28 19.181189087351907 26.990995309534494 28.192401055703108 25.63541454741049 29 20.738657740940265 25.60275129384944 27.1824599443164 26.476131020893888 30 21.469344756182192 26.763467321418123 27.563215379598844 24.203972542800848 31 24.568173393940576 27.416119259893033 23.480921817213982 24.53478552895241 32 21.534113869898803 28.444844529044378 25.102769409135124 24.918272191921698 33 22.046581366895847 27.642699679220094 25.62209284501955 24.688626108864504 34 21.586731807375987 25.531404937948178 27.062118708073562 25.81974454660227 35 20.782468862610887 25.23604217238506 28.126349937153893 25.85513902785016 36 20.83893281458587 26.387895644806626 27.15330826920987 25.619863271397637 37 21.39783118225928 26.813967163954484 28.169380708056842 23.61882094572939 38 20.600256958359925 28.011248198922555 25.962214301042604 25.426280541674913 39 22.914052723842225 26.3377859776541 25.688924314336436 25.05923698416724 40 23.269056583791556 24.664769671110022 28.866010986224023 23.2001627588744 41 20.591059967169528 24.781432110876697 28.1718889783815 26.45561894357228 42 21.453347565444954 23.425293955347215 28.724433061232453 26.396925417975382 43 21.49465041679092 23.4295858845694 28.884293489923717 26.191470208715963 44 20.857103839604473 24.671960046040695 27.024606131884855 27.446329982469976 45 21.315448436929543 23.568209624511933 27.06724672740397 28.049095211154558 46 22.54890430391318 25.09067397223623 27.422083369331656 24.938338354518926 47 20.079372820940154 23.798970494380082 30.90484458478372 25.216812099896046 48 19.453475765928214 23.244865709993785 29.82818348276122 27.473475041316785 49 21.537736927034416 22.297129702658488 30.68690376324158 25.478229607065515 50 20.11710835449106 22.640595519114413 30.065242898111272 27.177053228283256 51 19.674426511859938 22.24495767990569 27.85211238165841 30.22850342657596 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1027.0 1 1701.5 2 2376.0 3 2977.5 4 3579.0 5 3010.0 6 2441.0 7 2536.0 8 2631.0 9 2723.0 10 2815.0 11 2974.0 12 3133.0 13 3390.0 14 3647.0 15 3843.0 16 4039.0 17 4113.5 18 4188.0 19 4538.0 20 4888.0 21 4828.0 22 4768.0 23 5145.5 24 5523.0 25 7785.5 26 11870.5 27 13693.0 28 16917.0 29 20141.0 30 22408.5 31 24676.0 32 28827.0 33 32978.0 34 34119.0 35 35260.0 36 39103.0 37 42946.0 38 48913.5 39 54881.0 40 61916.5 41 68952.0 42 79442.0 43 89932.0 44 105641.5 45 121351.0 46 147271.5 47 173192.0 48 190131.5 49 207071.0 50 202672.5 51 198274.0 52 170698.0 53 143122.0 54 126626.5 55 110131.0 56 97768.5 57 85406.0 58 82144.5 59 78883.0 60 73686.0 61 68489.0 62 63188.5 63 57888.0 64 48570.5 65 39253.0 66 31646.0 67 24039.0 68 20403.5 69 16768.0 70 14154.5 71 11541.0 72 10066.0 73 8591.0 74 7036.0 75 4274.5 76 3068.0 77 2231.5 78 1395.0 79 1127.5 80 860.0 81 696.5 82 533.0 83 302.0 84 71.0 85 80.5 86 90.0 87 47.0 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1794065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.59537922788189 #Duplication Level Percentage of deduplicated Percentage of total 1 66.38338630408079 16.32724560579848 2 13.466580356436433 6.6243130153859795 3 6.091259602266186 4.494505196796415 4 3.2329548900392697 3.180630061886042 5 1.9372589366437643 2.38238091046783 6 1.2610357657055937 1.8609391726470896 7 0.8702073084813728 1.4982155131281636 8 0.6404966809017846 1.2602607008783235 9 0.49083564980747213 1.086506005102075 >10 3.765844025991353 21.95956244897177 >50 1.6384413614387028 28.047130327103503 >100 0.21070366056497547 7.635078336626075 >500 0.00715983288337429 1.2128805192642773 >1k 0.0030684998071604094 1.275772949612438 >5k 7.671249517901023E-4 1.1545792363315324 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 6530 0.3639778937775387 Illumina PCR Primer Index 4 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 6412 0.357400651592891 TruSeq Adapter, Index 13 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 5416 0.30188426840722044 TruSeq Adapter, Index 13 (96% over 25bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 2716 0.15138804892799312 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG 2441 0.1360597302773311 No Hit TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 2172 0.1210658476699562 TruSeq Adapter, Index 13 (96% over 25bp) GAATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTC 2100 0.11705261515051014 TruSeq Adapter, Index 13 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 1804 0.10055377034834301 RNA PCR Primer, Index 13 (96% over 25bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2295736219144792E-4 0.0 0.0 0.38471292846134336 0.0 2 2.2295736219144792E-4 0.0 0.0 1.3210781103248768 0.0 3 2.2295736219144792E-4 0.0 0.0 1.8586283105684576 0.0 4 2.2295736219144792E-4 0.0 0.0 2.582124950879706 0.0 5 2.2295736219144792E-4 0.0 0.0 4.383286001343318 0.0 6 2.2295736219144792E-4 0.0 0.0 5.535473909808173 0.0 7 2.2295736219144792E-4 0.0 0.0 6.5395066510968105 0.0 8 2.2295736219144792E-4 0.0 0.0 8.285485754418039 0.0 9 2.2295736219144792E-4 0.0 0.0 8.880837650809752 0.0 10 2.2295736219144792E-4 0.0 0.0 10.280954146031497 0.0 11 2.2295736219144792E-4 0.0 0.0 12.2831112585107 0.0 12 2.2295736219144792E-4 0.0 0.0 14.048320434320942 0.0 13 2.2295736219144792E-4 0.0 0.0 14.692277035670392 0.0 14 2.2295736219144792E-4 0.0 0.0 14.955812637780683 0.0 15 2.2295736219144792E-4 0.0 0.0 15.476139381794974 0.0 16 2.2295736219144792E-4 0.0 0.0 16.454643505112692 0.0 17 2.2295736219144792E-4 0.0 0.0 17.601982090949882 0.0 18 2.2295736219144792E-4 0.0 0.0 18.865202765786076 0.0 19 3.344360432871719E-4 0.0 0.0 19.705250367182906 0.0 20 3.344360432871719E-4 0.0 0.0 20.41013006775117 0.0 21 3.344360432871719E-4 0.0 0.0 21.215842235370513 0.0 22 3.344360432871719E-4 0.0 0.0 22.062076903568155 0.0 23 3.344360432871719E-4 5.573934054786198E-5 0.0 22.834289727518232 0.0 24 3.344360432871719E-4 5.573934054786198E-5 0.0 23.455950592648538 0.0 25 3.344360432871719E-4 5.573934054786198E-5 0.0 24.03391181478932 0.0 26 3.344360432871719E-4 5.573934054786198E-5 0.0 24.540303723666646 0.0 27 3.344360432871719E-4 5.573934054786198E-5 0.0 25.032091925320433 0.0 28 3.9017538383503384E-4 5.573934054786198E-5 0.0 25.55280884471856 0.0 29 3.9017538383503384E-4 5.573934054786198E-5 0.0 26.10808415525636 0.0 30 3.9017538383503384E-4 5.573934054786198E-5 0.0 26.724895697759 0.0 31 5.573934054786198E-4 5.573934054786198E-5 0.0 27.28329241136748 0.0 32 5.573934054786198E-4 5.573934054786198E-5 0.0 27.903448314302995 0.0 33 5.573934054786198E-4 5.573934054786198E-5 0.0 28.480071792270625 0.0 34 5.573934054786198E-4 5.573934054786198E-5 0.0 29.053183691783744 0.0 35 5.573934054786198E-4 5.573934054786198E-5 0.0 29.673060898016516 0.0 36 5.573934054786198E-4 5.573934054786198E-5 0.0 30.2717571548411 0.0 37 5.573934054786198E-4 5.573934054786198E-5 0.0 30.91342844322809 0.0 38 5.573934054786198E-4 5.573934054786198E-5 0.0 31.503819538311042 0.0 39 6.688720865743438E-4 5.573934054786198E-5 0.0 32.13016250804737 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAGAT 20 7.0343446E-4 45.000004 30 TATTCGC 30 2.1661854E-6 45.000004 24 CGTAATG 55 1.8189894E-12 45.000004 22 CGTAACA 20 7.0343446E-4 45.000004 32 CGCAATA 20 7.0343446E-4 45.000004 20 TCGACAG 55 1.8189894E-12 45.000004 1 ATTCGCG 25 3.891684E-5 45.0 1 CGACATA 25 3.891684E-5 45.0 29 GATATCG 25 3.891684E-5 45.0 24 CACGTCG 25 3.891684E-5 45.0 19 GTTGCGA 25 3.891684E-5 45.0 13 CGCAATC 80 0.0 42.187504 20 ATCGTAG 65 0.0 41.53846 1 TAGCGAG 125 0.0 41.399998 1 CACGTAA 60 3.6379788E-12 41.250004 20 TTAACGG 160 0.0 40.781254 2 TAGGTCG 50 1.0822987E-9 40.5 1 TATCGCG 50 1.0822987E-9 40.5 1 TATAACG 110 0.0 38.86364 1 CGACCGT 35 6.2502513E-6 38.571426 22 >>END_MODULE