##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935104.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1502258 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.892890568730536 33.0 31.0 34.0 30.0 34.0 2 32.210175615639926 34.0 31.0 34.0 30.0 34.0 3 32.27026116685683 34.0 31.0 34.0 30.0 34.0 4 35.82811541026908 37.0 35.0 37.0 35.0 37.0 5 30.329326919876614 37.0 35.0 37.0 0.0 37.0 6 32.80015416792588 37.0 35.0 37.0 17.0 37.0 7 35.000640369363985 37.0 35.0 37.0 32.0 37.0 8 35.54162134600049 37.0 35.0 37.0 33.0 37.0 9 37.339325868126515 39.0 37.0 39.0 34.0 39.0 10 37.322547125726736 39.0 37.0 39.0 34.0 39.0 11 37.26637634813727 39.0 37.0 39.0 34.0 39.0 12 37.1388050521282 39.0 37.0 39.0 34.0 39.0 13 37.08271016030535 39.0 37.0 39.0 33.0 39.0 14 38.24950707534924 40.0 37.0 41.0 34.0 41.0 15 38.346286057388276 40.0 38.0 41.0 34.0 41.0 16 38.42484113913855 40.0 38.0 41.0 34.0 41.0 17 38.41353615690514 40.0 38.0 41.0 34.0 41.0 18 38.36327315281397 40.0 37.0 41.0 34.0 41.0 19 38.36365857262867 40.0 37.0 41.0 34.0 41.0 20 38.28935309380945 40.0 37.0 41.0 34.0 41.0 21 38.22820713885365 40.0 37.0 41.0 34.0 41.0 22 38.206744114526266 40.0 37.0 41.0 34.0 41.0 23 38.146885554944625 40.0 37.0 41.0 34.0 41.0 24 38.13057810309547 40.0 37.0 41.0 34.0 41.0 25 38.07307599626695 40.0 37.0 41.0 34.0 41.0 26 37.97579710009865 40.0 36.0 41.0 34.0 41.0 27 37.93648361333406 40.0 36.0 41.0 34.0 41.0 28 37.83350929068109 40.0 36.0 41.0 33.0 41.0 29 37.851528166267045 40.0 36.0 41.0 33.0 41.0 30 37.704803036495726 40.0 36.0 41.0 33.0 41.0 31 33.08328263187815 38.0 33.0 41.0 9.0 41.0 32 33.96152525065601 38.0 33.0 41.0 16.0 41.0 33 35.85562400067099 38.0 34.0 40.0 29.0 41.0 34 36.679582335391125 38.0 35.0 40.0 31.0 41.0 35 36.835698661614714 39.0 35.0 40.0 31.0 41.0 36 36.97328488182456 39.0 35.0 40.0 31.0 41.0 37 37.041607367043476 39.0 35.0 41.0 32.0 41.0 38 36.97831264669584 39.0 35.0 41.0 32.0 41.0 39 37.04484515975285 39.0 35.0 41.0 32.0 41.0 40 36.98801204586695 39.0 35.0 41.0 32.0 41.0 41 36.897334545730494 39.0 35.0 41.0 31.0 41.0 42 36.80019810179077 39.0 35.0 41.0 31.0 41.0 43 36.76424222736707 39.0 35.0 41.0 31.0 41.0 44 36.68392579703353 39.0 35.0 41.0 31.0 41.0 45 36.69297883585909 39.0 35.0 41.0 31.0 41.0 46 36.605336100723044 39.0 35.0 41.0 31.0 41.0 47 36.48311674825496 39.0 35.0 40.0 31.0 41.0 48 36.451666091976215 39.0 35.0 40.0 31.0 41.0 49 36.415903260292176 39.0 35.0 40.0 31.0 41.0 50 36.19715787834047 38.0 35.0 40.0 31.0 41.0 51 35.434957244361485 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 10.0 11 12.0 12 20.0 13 19.0 14 27.0 15 60.0 16 86.0 17 168.0 18 328.0 19 600.0 20 948.0 21 1714.0 22 2645.0 23 4382.0 24 6103.0 25 7812.0 26 9472.0 27 11563.0 28 14271.0 29 18246.0 30 23754.0 31 33087.0 32 49045.0 33 58794.0 34 102021.0 35 148125.0 36 176682.0 37 181401.0 38 279682.0 39 370855.0 40 322.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.259318971841054 21.58544005091003 24.573608527962573 11.581632449286342 2 31.548775243666533 25.98834554384134 24.24090935112344 18.221969861368688 3 31.438208350363254 24.884806737591013 26.090258797090783 17.586726114954953 4 28.88139054676361 26.393202765437096 25.612245033809106 19.113161653990193 5 21.49178103894271 39.08376590439192 20.970033110158177 18.45441994650719 6 25.60745224854852 33.666054698993115 24.279983864289623 16.446509188168744 7 76.58398224539327 7.203955645435071 9.917936865704826 6.294125243466834 8 75.2406044767277 6.671557082738118 10.384634330454556 7.703204110079627 9 68.05428894371008 9.297470873844572 13.540949690399383 9.107290492045973 10 36.73723155410056 27.805343689299704 19.57593169748472 15.881493059115012 11 29.24903711612786 26.14078274171281 23.82167377374592 20.788506368413415 12 27.175292126918276 22.58340444850352 30.253125628220985 19.988177796357217 13 23.44670489356688 25.202794726338617 30.503282392238884 20.847217987855615 14 18.35869737421934 29.424905708606648 29.32419065167235 22.892206265501667 15 16.83066424009724 27.610969620398095 35.3022583337882 20.25610780571646 16 18.933165940870346 27.274143322917897 31.957293620669684 21.835397115542072 17 18.286139930691 26.68403163770804 28.23942358769266 26.790404843908306 18 19.26340215861723 27.602582246192064 30.611120060602108 22.5228955345886 19 21.74573209129191 28.095240631103312 28.389131560624076 21.769895716980706 20 24.294095954223575 27.85466943760659 27.62721183711453 20.224022771055306 21 22.44481307471819 28.07660202175658 28.24068835046976 21.237896553055467 22 19.482006419669588 27.55718391914039 26.732026056775865 26.228783604414158 23 20.983346402548698 27.820720542010758 28.013962981059176 23.181970074381365 24 22.606569577263027 25.071192831058315 27.92176843125482 24.400469160423842 25 21.03520167640978 27.945000126476277 25.705105248232996 25.31469294888095 26 20.747634560774515 28.91134545464228 26.7047338073753 23.63628617720791 27 24.12315327992928 28.42660847870339 25.762685237821998 21.68755300354533 28 19.50676914351596 29.33603948189991 27.694244264300806 23.46294711028332 29 23.077593862039677 26.73402305063444 26.54923455225401 23.63914853507187 30 25.25238674049331 28.181311066408032 24.552240693675785 22.01406149942287 31 25.324544785249937 30.552142175312095 22.620548534273073 21.502764505164894 32 25.34305026167276 28.71124667001274 25.335794517319925 20.609908550994568 33 25.030387589881364 28.96752754853028 24.813913455611488 21.18817140597687 34 24.391083289288524 26.901703968293063 26.633441126624056 22.073771615794357 35 24.55596841554513 24.646565370262632 27.614897041653297 23.18256917253894 36 27.15359146032173 28.12606090298737 24.934132485897894 19.78621515079301 37 25.021134851669952 27.825380194347442 28.046048015720338 19.10743693826227 38 20.743241174285643 28.624310870702637 28.269911027266954 22.36253692774477 39 25.822927885889108 24.810651698975807 28.031403394090766 21.335017021044322 40 25.86752741539736 23.342128981839338 30.589685659853366 20.200657942909938 41 23.819410514039532 24.895590504427332 27.292848498726585 23.992150482806547 42 26.356191812591444 23.701721009307324 27.92562928604807 22.01645789205316 43 26.09411965188403 24.267203103594724 28.155816111480185 21.482861133041062 44 23.098562297554746 25.13669422961968 26.629314005982994 25.13542946684258 45 23.42973044576897 22.905785823739997 27.130692597410032 26.533791133081003 46 25.045032211510936 25.405889001756023 27.41879224474092 22.130286541992124 47 22.56709566532513 23.887441438155097 31.497718767348886 22.047744129170887 48 21.668581561888836 22.42510940198022 31.104444110132878 24.801864925998064 49 23.749715428375154 21.73860947986298 31.879943391880754 22.631731699881115 50 21.643752271580514 21.64621523067276 31.158762343086206 25.551270154660514 51 21.189902133987637 21.268783391401477 27.987070130430325 29.554244344180557 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1643.0 1 1943.5 2 2244.0 3 2895.0 4 3546.0 5 3050.5 6 2555.0 7 2543.0 8 2531.0 9 2830.5 10 3130.0 11 3298.0 12 3466.0 13 3467.5 14 3469.0 15 3689.5 16 3910.0 17 4023.5 18 4137.0 19 4143.0 20 4149.0 21 4514.0 22 4879.0 23 5221.5 24 5564.0 25 7439.0 26 11887.5 27 14461.0 28 15633.0 29 16805.0 30 19577.0 31 22349.0 32 23914.5 33 25480.0 34 29267.0 35 33054.0 36 35406.0 37 37758.0 38 43247.5 39 48737.0 40 55618.5 41 62500.0 42 71584.0 43 80668.0 44 93301.5 45 105935.0 46 127538.0 47 149141.0 48 167933.5 49 186726.0 50 181788.0 51 176850.0 52 147371.5 53 117893.0 54 100869.0 55 83845.0 56 73448.5 57 63052.0 58 58316.0 59 53580.0 60 53689.5 61 53799.0 62 48238.5 63 42678.0 64 34788.0 65 26898.0 66 21323.0 67 15748.0 68 13189.0 69 10630.0 70 9212.5 71 7795.0 72 6517.0 73 5239.0 74 3921.0 75 2189.0 76 1775.0 77 1363.5 78 952.0 79 662.0 80 372.0 81 267.0 82 162.0 83 136.0 84 110.0 85 89.5 86 69.0 87 55.5 88 42.0 89 28.0 90 14.0 91 7.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1502258.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.309594733612002 #Duplication Level Percentage of deduplicated Percentage of total 1 64.79076766982611 17.046188398727356 2 13.70641094492308 7.212202344265403 3 6.419996591103523 5.0672252550931285 4 3.6227118983472026 3.812483275285964 5 2.261834231964193 2.9753970998794235 6 1.4032826552065276 2.2151878773114433 7 0.9905331043724772 1.8242367182386532 8 0.7276585326190196 1.5315520878128954 9 0.5574152600989197 1.3198832632380153 >10 4.248546239254091 26.00004650584516 >50 1.1208517973958787 19.76681805455324 >100 0.1349636137384994 6.03262009219077 >500 0.009923795099354992 1.7402835929986422 >1k 0.004253055042580711 1.6698636130684816 >5k 8.506110085161421E-4 1.7860118214914265 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT 8230 0.5478419818699584 TruSeq Adapter, Index 14 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 7959 0.5298024706808019 TruSeq Adapter, Index 15 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 7753 0.5160897795185647 TruSeq Adapter, Index 15 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 2609 0.17367189923435256 TruSeq Adapter, Index 15 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCC 2282 0.15190466617584997 No Hit ACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 1974 0.13140219589444688 TruSeq Adapter, Index 14 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTG 1737 0.11562594441167895 No Hit GCCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTG 1652 0.10996779514570734 TruSeq Adapter, Index 15 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.656646195260734E-5 0.0 0.0 0.5807923805364991 0.0 2 6.656646195260734E-5 0.0 0.0 2.013302641756609 0.0 3 6.656646195260734E-5 0.0 0.0 2.777552191434494 0.0 4 6.656646195260734E-5 0.0 0.0 3.686450662935395 0.0 5 6.656646195260734E-5 0.0 0.0 5.94245462497121 0.0 6 6.656646195260734E-5 0.0 0.0 7.481271525929634 0.0 7 1.3313292390521467E-4 0.0 0.0 8.787704908211506 0.0 8 1.9969938585782203E-4 0.0 0.0 10.983532788642163 0.0 9 1.9969938585782203E-4 0.0 0.0 11.800236710338703 0.0 10 1.9969938585782203E-4 0.0 0.0 13.525306571840522 0.0 11 1.9969938585782203E-4 0.0 0.0 16.128854031730903 0.0 12 2.6626584781042935E-4 0.0 0.0 18.237280147617785 0.0 13 2.6626584781042935E-4 0.0 0.0 19.096120639730326 0.0 14 2.6626584781042935E-4 0.0 0.0 19.444862333900037 0.0 15 2.6626584781042935E-4 0.0 0.0 20.102405845067892 0.0 16 2.6626584781042935E-4 0.0 0.0 21.380615047481857 0.0 17 2.6626584781042935E-4 0.0 0.0 22.818716891505986 0.0 18 3.328323097630367E-4 0.0 0.0 24.547780740724964 0.0 19 3.328323097630367E-4 0.0 0.0 25.516522461521255 0.0 20 3.328323097630367E-4 0.0 0.0 26.42009561606595 0.0 21 3.9939877171564405E-4 0.0 0.0 27.404480455421105 0.0 22 3.9939877171564405E-4 0.0 0.0 28.477598388559088 0.0 23 3.9939877171564405E-4 0.0 0.0 29.425438240302267 0.0 24 3.9939877171564405E-4 0.0 0.0 30.162595239965437 0.0 25 3.9939877171564405E-4 0.0 0.0 30.853555115033505 0.0 26 3.9939877171564405E-4 0.0 0.0 31.45192104152549 0.0 27 3.9939877171564405E-4 0.0 0.0 32.03104926051317 0.0 28 4.659652336682514E-4 0.0 0.0 32.625421199288006 0.0 29 4.659652336682514E-4 0.0 0.0 33.247218520387314 0.0 30 4.659652336682514E-4 0.0 0.0 33.92759432800491 0.0 31 4.659652336682514E-4 0.0 0.0 34.58327397823809 0.0 32 4.659652336682514E-4 0.0 0.0 35.32602256070528 0.0 33 4.659652336682514E-4 0.0 0.0 36.000540519671056 0.0 34 4.659652336682514E-4 0.0 0.0 36.654289742507615 0.0 35 4.659652336682514E-4 0.0 0.0 37.33333422088616 0.0 36 4.659652336682514E-4 0.0 0.0 38.06043968479449 0.0 37 5.99098157573466E-4 0.0 0.0 38.7590547029871 0.0 38 5.99098157573466E-4 0.0 0.0 39.461397443049066 0.0 39 5.99098157573466E-4 0.0 0.0 40.13172171491182 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 20 7.0339785E-4 45.000004 12 TATCACG 40 6.8175723E-9 45.000004 1 GTCGACT 20 7.0339785E-4 45.000004 30 CGACGAA 30 2.165949E-6 45.000004 16 ACGTTAT 20 7.0339785E-4 45.000004 25 TACGGAT 20 7.0339785E-4 45.000004 4 ATCGTAC 40 6.8175723E-9 45.000004 11 ATCGTAA 20 7.0339785E-4 45.000004 14 GCGATCG 20 7.0339785E-4 45.000004 9 TCGAGTA 20 7.0339785E-4 45.000004 26 ACCGTAT 20 7.0339785E-4 45.000004 34 CGCCGAT 30 2.165949E-6 45.000004 28 TACCGGC 20 7.0339785E-4 45.000004 37 CCCGATA 20 7.0339785E-4 45.000004 27 ATTCACG 45 3.8562575E-10 45.0 1 GTTCGAC 25 3.8913797E-5 45.0 26 TACGACT 45 3.8562575E-10 45.0 42 CTACCGT 50 2.1827873E-11 45.0 9 TCATCGA 25 3.8913797E-5 45.0 16 ATACCGG 25 3.8913797E-5 45.0 2 >>END_MODULE