SRR2935103.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935103.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1414579
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	9861	0.6970978644529574	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	8765	0.6196189820434207	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	7563	0.5346467040723777	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3159	0.22331732621507883	No Hit
ACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	2574	0.18196226580487904	No Hit
TGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCTT	2169	0.15333183936704844	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	2100	0.14845406301097358	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	2017	0.14258659290149223	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1836	0.12979126651816547	No Hit
GGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1702	0.1203184834498462	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1688	0.11932878969643972	No Hit
GGCCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1634	0.11551139950472897	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	1448	0.10236261106661418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACCGA	20	7.033838E-4	45.000004	42
ATATACG	20	7.033838E-4	45.000004	1
CTAGCGA	20	7.033838E-4	45.000004	16
CTTACGG	55	1.8189894E-12	45.0	2
GTCAACG	25	3.891265E-5	44.999996	1
CGTATGG	125	0.0	43.199997	2
ACGCATC	170	0.0	42.35294	29
GCGTAAG	85	0.0	42.35294	1
TACGCAT	185	0.0	41.351353	28
ATTTACG	55	6.184564E-11	40.909092	1
CGTTATG	55	6.184564E-11	40.909092	1
TTACGCC	110	0.0	40.909092	30
TACACGG	110	0.0	40.909092	2
TAACGAC	50	1.0822987E-9	40.499996	23
TTATTCG	95	0.0	40.263157	29
TAGTACG	95	0.0	40.263157	1
CGGGTAT	85	0.0	39.705883	6
GTTTACG	40	3.458972E-7	39.375004	1
ACGGATC	40	3.458972E-7	39.375004	5
TCACGCC	115	0.0	39.130436	30