SRR2935100.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935100.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3420990
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	10659	0.311576473476976	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	10142	0.2964638891081237	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8626	0.2521492316551641	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	7051	0.2061099272432834	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	6619	0.19348200374745322	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC	6211	0.18155563155694698	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	6077	0.17763863676888855	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	5299	0.15489668195463885	No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	3717	0.10865275841203863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGCG	110	0.0	42.954544	1
CGTTTTT	9055	0.0	42.912754	1
CGTTATT	1790	0.0	41.606148	1
CGCGCCG	225	0.0	40.0	27
CCGCCCG	45	1.9303116E-8	40.0	29
ACGCGCC	220	0.0	39.886364	26
TGTCGCG	335	0.0	38.955223	29
GCGCGAG	240	0.0	38.437504	1
CGACGAA	295	0.0	38.135593	29
TAATACG	270	0.0	37.500004	4
CCGTCGT	30	1.1403934E-4	37.500004	32
CGCGAGG	330	0.0	37.5	2
AAGGGCG	1815	0.0	37.438015	5
CCGCGAA	85	0.0	37.058823	30
CGTAAGG	705	0.0	37.02128	2
ACGCGAC	305	0.0	36.885246	26
TTTCGCG	55	2.752131E-9	36.81818	1
TCGCTAG	55	2.752131E-9	36.81818	1
CGCGACG	315	0.0	36.428574	27
GACGCGA	310	0.0	36.29032	25