FastQCFastQC Report
Sat 14 Jan 2017
SRR2935100.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935100.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3420990
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC106590.311576473476976No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT101420.2964638891081237No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT86260.2521492316551641No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC70510.2061099272432834No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC66190.19348200374745322No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC62110.18155563155694698No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG60770.17763863676888855No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC52990.15489668195463885No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC37170.10865275841203863No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTCGCG1100.042.9545441
CGTTTTT90550.042.9127541
CGTTATT17900.041.6061481
CGCGCCG2250.040.027
CCGCCCG451.9303116E-840.029
ACGCGCC2200.039.88636426
TGTCGCG3350.038.95522329
GCGCGAG2400.038.4375041
CGACGAA2950.038.13559329
TAATACG2700.037.5000044
CCGTCGT301.1403934E-437.50000432
CGCGAGG3300.037.52
AAGGGCG18150.037.4380155
CCGCGAA850.037.05882330
CGTAAGG7050.037.021282
ACGCGAC3050.036.88524626
TTTCGCG552.752131E-936.818181
TCGCTAG552.752131E-936.818181
CGCGACG3150.036.42857427
GACGCGA3100.036.2903225