Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935100.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3420990 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC | 10659 | 0.311576473476976 | No Hit |
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT | 10142 | 0.2964638891081237 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8626 | 0.2521492316551641 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC | 7051 | 0.2061099272432834 | No Hit |
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC | 6619 | 0.19348200374745322 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC | 6211 | 0.18155563155694698 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG | 6077 | 0.17763863676888855 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC | 5299 | 0.15489668195463885 | No Hit |
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC | 3717 | 0.10865275841203863 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTCGCG | 110 | 0.0 | 42.954544 | 1 |
CGTTTTT | 9055 | 0.0 | 42.912754 | 1 |
CGTTATT | 1790 | 0.0 | 41.606148 | 1 |
CGCGCCG | 225 | 0.0 | 40.0 | 27 |
CCGCCCG | 45 | 1.9303116E-8 | 40.0 | 29 |
ACGCGCC | 220 | 0.0 | 39.886364 | 26 |
TGTCGCG | 335 | 0.0 | 38.955223 | 29 |
GCGCGAG | 240 | 0.0 | 38.437504 | 1 |
CGACGAA | 295 | 0.0 | 38.135593 | 29 |
TAATACG | 270 | 0.0 | 37.500004 | 4 |
CCGTCGT | 30 | 1.1403934E-4 | 37.500004 | 32 |
CGCGAGG | 330 | 0.0 | 37.5 | 2 |
AAGGGCG | 1815 | 0.0 | 37.438015 | 5 |
CCGCGAA | 85 | 0.0 | 37.058823 | 30 |
CGTAAGG | 705 | 0.0 | 37.02128 | 2 |
ACGCGAC | 305 | 0.0 | 36.885246 | 26 |
TTTCGCG | 55 | 2.752131E-9 | 36.81818 | 1 |
TCGCTAG | 55 | 2.752131E-9 | 36.81818 | 1 |
CGCGACG | 315 | 0.0 | 36.428574 | 27 |
GACGCGA | 310 | 0.0 | 36.29032 | 25 |