SRR2935097.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935097.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	862264
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	8440	0.9788185520907751	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	7912	0.9175844057040534	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	7762	0.900188341389644	No Hit
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	2751	0.31904381952627037	No Hit
ACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	2242	0.2600131746193741	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC	1829	0.21211601087369994	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1647	0.1910087861722164	No Hit
TGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCTT	1532	0.17767180353116913	Illumina Single End Adapter 2 (95% over 22bp)
AGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	1391	0.16131950307562418	No Hit
GGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	1384	0.16050768674095173	No Hit
GCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	1357	0.157376395164358	No Hit
AAAACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	1349	0.1564486050675895	No Hit
ACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	1321	0.15320133972889974	No Hit
CGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	1295	0.15018602191440208	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	1180	0.1368490392733548	No Hit
GGCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT	1003	0.11632168338235158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	35	1.211447E-7	45.000004	1
CCCCTTA	20	7.0323044E-4	45.000004	23
TCCATAG	20	7.0323044E-4	45.000004	10
ATAGCGT	20	7.0323044E-4	45.000004	24
CGACCTT	20	7.0323044E-4	45.000004	15
TACGGAG	20	7.0323044E-4	45.000004	1
TAGTTCG	20	7.0323044E-4	45.000004	1
ACTAGCG	20	7.0323044E-4	45.000004	1
ACGTGCG	20	7.0323044E-4	45.000004	1
GTCAACG	20	7.0323044E-4	45.000004	1
ACGCTTC	20	7.0323044E-4	45.000004	23
GTATACG	20	7.0323044E-4	45.000004	1
CGGTCAA	20	7.0323044E-4	45.000004	15
CCAACGA	20	7.0323044E-4	45.000004	43
ATAGTAC	20	7.0323044E-4	45.000004	39
TGTCGTT	20	7.0323044E-4	45.000004	38
CTAGGCG	40	6.8121153E-9	45.000004	1
ACGCCTC	25	3.8899925E-5	45.0	23
AGGACGT	25	3.8899925E-5	45.0	15
ATTCGTT	25	3.8899925E-5	45.0	22