SRR2935090.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935090.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2104074
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	9583	0.4554497607973864	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT	7813	0.3713272441938829	TruSeq Adapter, Index 16 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	7301	0.3469934992780672	TruSeq Adapter, Index 13 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	3035	0.14424397620996218	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC	2373	0.11278120446334113	No Hit
ACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	2331	0.11078507695071561	TruSeq Adapter, Index 16 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG	2274	0.10807604675500956	No Hit
TGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCTT	2253	0.10707798299869681	TruSeq Adapter, Index 13 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGACA	20	7.0346234E-4	45.000004	23
TAGTCGA	20	7.0346234E-4	45.000004	38
CGTGTTA	95	0.0	42.63158	10
CTAACGG	175	0.0	42.42857	2
TATACGC	225	0.0	40.0	26
ACTATCG	130	0.0	39.807693	31
TAAGACG	120	0.0	39.375004	1
CCGTATC	195	0.0	39.23077	29
ACAACGA	510	0.0	38.82353	13
TAGCACG	175	0.0	38.571426	1
CCGTTTA	35	6.2507643E-6	38.571426	25
GTCGGTC	35	6.2507643E-6	38.571426	42
TAAACGG	240	0.0	38.437504	2
CGTATCG	195	0.0	38.076923	30
TTACGGG	835	0.0	37.724552	3
CGCATGG	305	0.0	37.62295	2
CGTGAAT	30	1.14024406E-4	37.500004	17
CGCTAAA	30	1.14024406E-4	37.500004	34
TCGAACT	30	1.14024406E-4	37.500004	25
CACAACG	530	0.0	37.35849	12