##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935090.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2104074 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.983806177919597 33.0 31.0 34.0 30.0 34.0 2 32.30554486201531 34.0 31.0 34.0 30.0 34.0 3 32.374899837173025 34.0 31.0 34.0 30.0 34.0 4 35.89917322299501 37.0 35.0 37.0 35.0 37.0 5 30.352164895341133 37.0 35.0 37.0 0.0 37.0 6 32.82576183157056 37.0 35.0 37.0 17.0 37.0 7 35.034833375632225 37.0 35.0 37.0 32.0 37.0 8 35.6053627391432 37.0 35.0 37.0 35.0 37.0 9 37.47689529930982 39.0 37.0 39.0 35.0 39.0 10 37.390334655530175 39.0 37.0 39.0 35.0 39.0 11 37.291335285736146 39.0 37.0 39.0 34.0 39.0 12 37.133471066131705 39.0 37.0 39.0 34.0 39.0 13 37.07579296165439 39.0 37.0 39.0 33.0 39.0 14 38.17462361114676 40.0 37.0 41.0 33.0 41.0 15 38.30612611533625 40.0 38.0 41.0 34.0 41.0 16 38.4028251858062 40.0 38.0 41.0 34.0 41.0 17 38.40111136775608 40.0 38.0 41.0 34.0 41.0 18 38.379715732431464 40.0 37.0 41.0 34.0 41.0 19 38.37828517438075 40.0 37.0 41.0 34.0 41.0 20 38.29284283727664 40.0 37.0 41.0 34.0 41.0 21 38.242546127179935 40.0 37.0 41.0 34.0 41.0 22 38.26677959045167 40.0 37.0 41.0 34.0 41.0 23 38.18872767782882 40.0 37.0 41.0 34.0 41.0 24 38.15896066393102 40.0 37.0 41.0 34.0 41.0 25 38.08508826210485 40.0 37.0 41.0 34.0 41.0 26 38.03860558136263 40.0 37.0 41.0 34.0 41.0 27 38.01588109543676 40.0 37.0 41.0 34.0 41.0 28 37.96783240513404 40.0 36.0 41.0 34.0 41.0 29 37.987532282609834 40.0 36.0 41.0 34.0 41.0 30 37.86983585178088 40.0 36.0 41.0 33.0 41.0 31 33.253034351453415 39.0 33.0 41.0 9.0 41.0 32 34.17267548574812 39.0 33.0 41.0 16.0 41.0 33 36.13903693501274 39.0 34.0 41.0 30.0 41.0 34 37.006871906596444 39.0 35.0 41.0 31.0 41.0 35 37.168954133742446 39.0 35.0 41.0 32.0 41.0 36 37.315980806758695 39.0 35.0 41.0 33.0 41.0 37 37.44160661649733 39.0 35.0 41.0 33.0 41.0 38 37.40331138543606 39.0 35.0 41.0 33.0 41.0 39 37.39264636129718 39.0 35.0 41.0 33.0 41.0 40 37.35943507690319 39.0 35.0 41.0 33.0 41.0 41 37.264837643542954 39.0 35.0 41.0 33.0 41.0 42 37.17187608420616 39.0 35.0 41.0 33.0 41.0 43 37.14706184288195 39.0 35.0 41.0 33.0 41.0 44 37.09340926222177 39.0 35.0 41.0 33.0 41.0 45 37.06112189970505 39.0 35.0 41.0 33.0 41.0 46 37.003408625362034 39.0 35.0 41.0 32.0 41.0 47 36.8963843476988 39.0 35.0 41.0 32.0 41.0 48 36.89425894716631 39.0 35.0 41.0 32.0 41.0 49 36.88336959631648 39.0 35.0 41.0 32.0 41.0 50 36.69685049099984 39.0 35.0 41.0 32.0 41.0 51 36.076669356686125 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 11.0 10 13.0 11 13.0 12 19.0 13 27.0 14 33.0 15 54.0 16 104.0 17 202.0 18 336.0 19 628.0 20 1044.0 21 1650.0 22 2784.0 23 4362.0 24 6432.0 25 8226.0 26 10652.0 27 13382.0 28 17091.0 29 22320.0 30 30074.0 31 43315.0 32 65941.0 33 79091.0 34 145714.0 35 198901.0 36 251179.0 37 254982.0 38 380741.0 39 564242.0 40 508.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.810709129051546 20.747321624619666 24.745279871335324 11.696689374993465 2 30.72971768103213 24.233415744883498 25.888300506541118 19.148566067543253 3 31.241201592719648 24.31725310041377 26.000701496240154 18.440843810626433 4 27.98176299882989 25.505661873109027 25.890914483045748 20.621660645015336 5 22.783656848570917 38.27384398077254 21.49330299219514 17.449196178461403 6 26.67876700154082 32.034947440061515 24.378895419077466 16.907390139320196 7 78.43569190057003 5.7864884980281115 9.717576473070814 6.060243128331038 8 78.0164100692276 5.059898083432427 9.689345526820825 7.234346320519146 9 71.53061156594302 6.998423059265026 12.361114675624526 9.109850699167426 10 39.80330539705352 24.194396204696222 19.254360825712403 16.74793757253785 11 29.245929563313837 22.883938492657578 25.085809719620126 22.784322224408456 12 25.028017075445064 21.029821194501714 31.58829014568879 22.35387158436443 13 23.256501434835467 23.310444404521892 33.17806312895839 20.25499103168425 14 19.277363818953138 25.820384644266316 31.867462836383133 23.034788700397417 15 17.329666161931566 24.449995580003364 35.81770413017793 22.402634127887136 16 20.85573035929345 25.328719427168433 30.164575960731423 23.650974252806698 17 21.0311519461768 25.167080625491312 27.72668641882367 26.07508100950822 18 22.482574282083235 23.41718969960182 30.422646732006577 23.677589286308372 19 21.537550485391673 25.99846773449983 27.981240203528962 24.48274157657953 20 22.743686771472866 26.934936698994427 28.81733247024582 21.50404405928689 21 22.053359340023214 26.748964152401484 29.915582816954156 21.28209369062115 22 21.49929137473302 22.97794659313313 29.135762335355125 26.386999696778723 23 20.56510369882428 25.158478266448803 29.197642288246517 25.078775746480396 24 21.712211642746404 23.74365160160717 29.308569945733847 25.23556680991258 25 21.337557519364815 26.80480819590946 26.68613366259932 25.17150062212641 26 20.382553085110125 25.139657635615475 28.37096033694632 26.106828942328075 27 21.265316714145985 24.44063279143224 29.141655664201927 25.152394830219848 28 18.02964154302558 24.427705489445714 29.20657733520779 28.336075632320917 29 19.76988451927071 22.58969979192747 29.26460761361055 28.375808075191273 30 21.062899878996653 23.314008917937297 29.604424559212273 26.018666643853784 31 23.278601418010965 24.863193975116847 25.049926951238405 26.808277655633784 32 20.501940521103347 24.198626093949166 27.39618473494754 27.903248649999952 33 20.48202677282263 23.625404809906875 26.3218879183907 29.570680498879792 34 18.33105679743203 22.230301785963803 29.025690161087493 30.412951255516678 35 18.283577478738867 23.49289996454497 30.615130456438315 27.60839210027784 36 20.01825981405597 25.64320456409803 28.579080393560304 25.7594552282857 37 18.80718073603875 24.639057371556326 28.828168591028643 27.725593301376282 38 19.018104876539514 25.360609940524903 26.648397347241588 28.972887835693996 39 20.931583204773215 23.033172787649104 26.635612625791676 29.399631381786 40 21.98677422942349 20.814191896292623 30.489849691598298 26.70918418268559 41 18.561847159367968 23.620794705889622 29.091752476386283 28.725605658356123 42 20.1079429715875 23.161447743758064 31.254984377925872 25.475624906728566 43 21.053489563579987 22.554815087302064 30.22384193711818 26.16785341199977 44 20.714005305897036 21.491972240520056 27.924493149955754 29.86952930362715 45 20.519525453952664 20.68406339320765 27.936469915031502 30.859941237808176 46 21.89732870611965 21.290600995972575 28.754359399907038 28.05771089800074 47 17.48588690321728 22.804996402217792 32.40171210708368 27.307404587481237 48 18.303015958564195 22.505292114250736 30.91659323769031 28.27509868949476 49 20.82379231909144 20.442627017871047 31.893032279282952 26.840548383754566 50 19.038208732202385 20.95672490606319 30.895158630352356 29.109907731382073 51 18.56108672983935 20.241731041778948 28.19891315609622 32.99826907228548 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1183.0 1 1633.5 2 2084.0 3 2741.5 4 3399.0 5 2800.5 6 2202.0 7 2256.0 8 2310.0 9 2460.0 10 2610.0 11 2792.0 12 2974.0 13 3183.0 14 3392.0 15 3507.0 16 3622.0 17 3694.0 18 3766.0 19 3866.5 20 3967.0 21 4368.0 22 4769.0 23 5471.0 24 6173.0 25 7543.5 26 11418.0 27 13922.0 28 16093.0 29 18264.0 30 21458.5 31 24653.0 32 28879.5 33 33106.0 34 39462.0 35 45818.0 36 48749.5 37 51681.0 38 54834.0 39 57987.0 40 67349.0 41 76711.0 42 90040.0 43 103369.0 44 120779.0 45 138189.0 46 168803.5 47 199418.0 48 227028.0 49 254638.0 50 248818.5 51 242999.0 52 208476.5 53 173954.0 54 153758.5 55 133563.0 56 121775.5 57 109988.0 58 99655.0 59 89322.0 60 81900.0 61 74478.0 62 67559.0 63 60640.0 64 55247.0 65 49854.0 66 42063.0 67 34272.0 68 29044.0 69 23816.0 70 20106.0 71 16396.0 72 13684.0 73 10972.0 74 8944.5 75 5513.0 76 4109.0 77 3183.0 78 2257.0 79 1587.5 80 918.0 81 569.5 82 221.0 83 223.0 84 225.0 85 130.5 86 36.0 87 20.5 88 5.0 89 3.5 90 2.0 91 3.0 92 4.0 93 4.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2104074.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.743149765969225 #Duplication Level Percentage of deduplicated Percentage of total 1 64.30519915482054 15.268079742633816 2 14.025639620749383 6.660257241579287 3 6.502910423501755 4.631987282996537 4 3.5437760579055024 3.3656162271962553 5 2.1077633029456333 2.502246988652607 6 1.4191606642605599 2.0217206516106505 7 0.9894776242810889 1.6445320796366922 8 0.7581586791295475 1.44008600519538 9 0.5362258383633007 1.1458521349778028 >10 3.9237157327107286 20.6090754709994 >50 1.6161693349900363 27.04714021260345 >100 0.2562783769227648 8.740607429573597 >500 0.009675118043859024 1.5628822227692538 >1k 0.005175063139738548 2.0405349301279925 >5k 6.750082356180714E-4 1.3193813794473512 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 9583 0.4554497607973864 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT 7813 0.3713272441938829 TruSeq Adapter, Index 16 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 7301 0.3469934992780672 TruSeq Adapter, Index 13 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 3035 0.14424397620996218 TruSeq Adapter, Index 13 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC 2373 0.11278120446334113 No Hit ACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 2331 0.11078507695071561 TruSeq Adapter, Index 16 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG 2274 0.10807604675500956 No Hit TGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCTT 2253 0.10707798299869681 TruSeq Adapter, Index 13 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4258053661610762E-4 0.0 0.0 0.3879616401324288 0.0 2 1.4258053661610762E-4 0.0 0.0 1.4983788592986749 0.0 3 1.4258053661610762E-4 0.0 0.0 2.160950612953727 0.0 4 1.4258053661610762E-4 0.0 0.0 2.9955220206133433 0.0 5 1.9010738215481014E-4 0.0 0.0 5.131758673886945 0.0 6 1.9010738215481014E-4 0.0 0.0 6.519257402543827 0.0 7 1.9010738215481014E-4 0.0 0.0 7.785752782459172 0.0 8 1.9010738215481014E-4 0.0 0.0 9.872276355299292 0.0 9 1.9010738215481014E-4 0.0 0.0 10.589646561860468 0.0 10 1.9010738215481014E-4 0.0 0.0 12.188972441083346 0.0 11 2.376342276935127E-4 0.0 0.0 14.466696513525665 0.0 12 2.8516107323221524E-4 0.0 0.0 16.408453314854896 0.0 13 2.8516107323221524E-4 0.0 0.0 17.151678125389125 0.0 14 2.8516107323221524E-4 0.0 0.0 17.457703483812832 0.0 15 3.3268791877091777E-4 0.0 0.0 18.053452492640467 0.0 16 3.3268791877091777E-4 0.0 0.0 19.10869104413628 0.0 17 3.3268791877091777E-4 0.0 0.0 20.39139307838032 0.0 18 3.802147643096203E-4 0.0 0.0 21.73302840109236 0.0 19 3.802147643096203E-4 0.0 0.0 22.60690451001248 0.0 20 3.802147643096203E-4 0.0 0.0 23.363104149378778 0.0 21 3.802147643096203E-4 0.0 0.0 24.227427362345622 0.0 22 3.802147643096203E-4 0.0 0.0 25.137138712801928 0.0 23 3.802147643096203E-4 0.0 0.0 25.97983721104866 0.0 24 3.802147643096203E-4 0.0 0.0 26.67178055524663 0.0 25 3.802147643096203E-4 0.0 0.0 27.3044103962123 0.0 26 3.802147643096203E-4 0.0 0.0 27.857480297746182 0.0 27 3.802147643096203E-4 0.0 0.0 28.45798199112769 0.0 28 4.277416098483228E-4 0.0 0.0 29.002402006773526 0.0 29 4.277416098483228E-4 0.0 0.0 29.626952283997618 0.0 30 4.277416098483228E-4 0.0 0.0 30.337288517419065 0.0 31 4.277416098483228E-4 0.0 0.0 30.893305083376344 0.0 32 4.277416098483228E-4 0.0 0.0 31.530640082050347 0.0 33 4.277416098483228E-4 0.0 0.0 32.146540473386395 0.0 34 4.277416098483228E-4 0.0 0.0 32.79019654251704 0.0 35 4.277416098483228E-4 0.0 0.0 33.509135134980994 0.0 36 4.277416098483228E-4 0.0 0.0 34.11006456997235 0.0 37 4.752684553870254E-4 0.0 0.0 34.75001354515098 0.0 38 4.752684553870254E-4 0.0 0.0 35.42147281892177 0.0 39 4.752684553870254E-4 0.0 0.0 36.27980764935074 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGACA 20 7.0346234E-4 45.000004 23 TAGTCGA 20 7.0346234E-4 45.000004 38 CGTGTTA 95 0.0 42.63158 10 CTAACGG 175 0.0 42.42857 2 TATACGC 225 0.0 40.0 26 ACTATCG 130 0.0 39.807693 31 TAAGACG 120 0.0 39.375004 1 CCGTATC 195 0.0 39.23077 29 ACAACGA 510 0.0 38.82353 13 TAGCACG 175 0.0 38.571426 1 CCGTTTA 35 6.2507643E-6 38.571426 25 GTCGGTC 35 6.2507643E-6 38.571426 42 TAAACGG 240 0.0 38.437504 2 CGTATCG 195 0.0 38.076923 30 TTACGGG 835 0.0 37.724552 3 CGCATGG 305 0.0 37.62295 2 CGTGAAT 30 1.14024406E-4 37.500004 17 CGCTAAA 30 1.14024406E-4 37.500004 34 TCGAACT 30 1.14024406E-4 37.500004 25 CACAACG 530 0.0 37.35849 12 >>END_MODULE